LOCUS VVC12408.1 2288 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Lin-5 protein.
ACCESSION BX284606-1111
PROTEIN_ID VVC12408.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="lfi-1"
/locus_tag="CELE_ZC8.4"
/standard_name="ZC8.4h"
/note="Confirmed by transcript evidence"
/db_xref="WormBase:WBGene00022500"
intron_pos 43:2 (1/16)
intron_pos 81:0 (2/16)
intron_pos 111:0 (3/16)
intron_pos 153:2 (4/16)
intron_pos 275:0 (5/16)
intron_pos 738:2 (6/16)
intron_pos 1249:1 (7/16)
intron_pos 1393:0 (8/16)
intron_pos 1454:1 (9/16)
intron_pos 1602:1 (10/16)
intron_pos 1686:1 (11/16)
intron_pos 1741:0 (12/16)
intron_pos 2001:0 (13/16)
intron_pos 2083:0 (14/16)
intron_pos 2162:2 (15/16)
intron_pos 2213:1 (16/16)
BEGIN
1 MSTHDDTRSS GGGDGTIHIP SADAKEPTPE SPGSRSNYGE FYWDTSGENN YHHTSSFDDD
61 LLLEIDSSRG AAVARLDRTQ DDLNKFRQRI DNNVEQQREY SEMMAALQNK VHEYRKHIAE
121 LEGRMVGARN RMLDDPTSNV MIFDNYDPGN TYITNHNVEL WSPARGKRET ILGGGGAPGL
181 TTVNVHAGAG YSGSGVAGYG GGVQAMVGDP NANYEMIARL DEERRRSDEY RMQWENERQK
241 SLSLEDENDR LRREFERYAN DSKDKEKTFI NRERNLAQYL SDEQRKMLDL WTELQRVRKQ
301 FSDLKTHTEE DLDKQKAEFT RAIRNVNNIS RNAAFSAGAG DGLGLYGLED GGDVNRTTNN
361 YEKVFIETIK RMNGTGGAGS ASSADLLEEL RKIRGGGSSE GDAELHKELM TKYEESIERN
421 IELESRGDDS QRKIAELEAE LRRNREKLNE AQGALKKLHE MAQDSEKNVD GTVSIKRTRS
481 LSPGKTPLPP SEALRAVRNT FRNKDNDIQQ LERKLKIAES QVKEFLNKFE NADEARRRLD
541 KQFADAKREI SNLQKSVDEA ERNSRRTDDK LRASEAERVA AEKARKFLED ELAKLQASFQ
601 KSSTDDARKL RDEMDEHTNS IQEEFKTRID ELNRRVENLL RENNRLKSEV NPLKDKYRDL
661 ENEYNSTQRR IEEKETQIRY SDDIRRNIQK DLDDLREKYD RVHTDNEKIL GELEHAQKAA
721 HLAEQQLKEI KIQRDDYQKQ KDEHARHLFD IRHKLETEIK GRQDLEKNGA RNNDELDKLR
781 QTISDYESQI NLLRRHNDEL DTTIKGHQGK ITHLENELHS RSGEIEKLND LNQRLQKEKQ
841 DILNQKLKLD GDVQALKETI RKLENELEKL RNENKELVGK EARARDAANQ QLSRANLLNK
901 ELEDTKQDLK HSTDVNKQLE QDIRDLKERL ANIGKGGRIS RDSTTGTDGG AFGDRSSVAD
961 PSRTRGAAGS TVFVPAAEDI ESRGGGEIDI PSSGDVIHGR DGRDGRDAGN RGTHTITNTK
1021 ERIERIEKNI LDRYHDDELV EHKIREVNDR WKRELERLEN EKDDLERRIR ELEDELSQIG
1081 RGNDKTENDI TELKRKHAAE IDKLKSDISA LHDKHLSDLD DEKEQYGKAV ENLKSVEDDL
1141 RDKLNNLEKQ LADSLNRENE LEREKRDYDE KINSLYGQNQ KIKDEWDDFR NDADKEIQKW
1201 KTDAYTVRSE AKALETTNTA LKAQLQAAND RIDHLTKTVN DHTSKVRDLT SQVRHLEDEL
1261 ADTKGNLVQK EMDLESTQNR LRSLEDQHST LQSDANKWRG ELDAALREND ILKSNNTNME
1321 TDLTRLKNRL KSAEDALKEL KNSLSHAKTE KERLQNAFRE KTKQADHLNQ LASQFDTKLT
1381 KLRNELQDTN DKLITSDTER NALRNELQKL SQELKFGNEQ IQRKSDEYQT TIDDLAHSHR
1441 VSEDSRLNAL QELEARKYEI NDLTSRLDST EQRLATLQQD YIKADSERDI LSDALRRFQS
1501 SANRVINFHT FVDGGAGYVD GVPGGTSVIG GGPSAQRSGA YDPSSGGVIG SGISGGPGGS
1561 DFGREIEIGR GDSDQSDVAY PRSVPFPPSA DFSSGRPGAA SAGGRVINNL DGTTTVNMNG
1621 GFDIANLEGT LQSLLNKIEK LEMERNELRD TLARMKKKTT ETHTTINQKE TRYRNIEDNL
1681 QDAEEERRAL ESRLQSAKTL LRSQEEALKQ RDEERRQMKS KMVAAELQAR GKEAQLRHLN
1741 EQLKNLRTDL DNAHTDIRSL RDKEEQWDSS RFQLETKMRE SDSDTNKYQL QIASFESERQ
1801 ILTEKIKELD GALRLSDSKV QDMKDDTDKL RRDLTKAESV ENELRKTIDI QSKTSHEYQL
1861 LKDQLLNTQN ELNGANNRKQ QLENELLNVR SEVRDYKQRV HDVNNRVSEL QRQLQDANTE
1921 KNRVEDRFLS VEKVVNTMRT TETDLRQQLE TAKNEKRVAT KELEDLKRRL AQLENERRNS
1981 SQLSDGWKKE KITLLKKIEL LENEKRRTDA AIRETALQRE AIEKSLNAME RENKELYKNC
2041 AQLQQQIAQL EMENGNRILE LTNKQREEQE RQLIRMRQEK GQIEKVIENR ERTHRNRIKQ
2101 LEDQIAILRD QLDGERRRRR EYVDRSMVND IGRLGSNVLG IRNSYGDNSI DAIINGGSRS
2161 VGFYPRSTFA SNPLTPPLGS STPTHRPHVT DFRSAVDAGS SYRRPISTIE DSGSVYGGSI
2221 RDRDSVYGGG GRDSSFGTRA GDSISRAGVE PRDPSLVEIP SNEPPMTTST HSQGGSRYDT
2281 LAPNRDDL
//