LOCUS VVC12407.1 2293 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Lin-5 protein.
ACCESSION BX284606-1110
PROTEIN_ID VVC12407.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="lfi-1"
/locus_tag="CELE_ZC8.4"
/standard_name="ZC8.4g"
/note="Confirmed by transcript evidence"
/db_xref="WormBase:WBGene00022500"
intron_pos 43:2 (1/16)
intron_pos 86:0 (2/16)
intron_pos 116:0 (3/16)
intron_pos 158:2 (4/16)
intron_pos 280:0 (5/16)
intron_pos 743:2 (6/16)
intron_pos 1254:1 (7/16)
intron_pos 1398:0 (8/16)
intron_pos 1459:1 (9/16)
intron_pos 1607:1 (10/16)
intron_pos 1691:1 (11/16)
intron_pos 1746:0 (12/16)
intron_pos 2006:0 (13/16)
intron_pos 2088:0 (14/16)
intron_pos 2167:2 (15/16)
intron_pos 2218:1 (16/16)
BEGIN
1 MSTHDDTRSS GGGDGTIHIP SADAKEPTPE SPGSRSNYGE FYWDEYSRDT SGENNYHHTS
61 SFDDDLLLEI DSSRGAAVAR LDRTQDDLNK FRQRIDNNVE QQREYSEMMA ALQNKVHEYR
121 KHIAELEGRM VGARNRMLDD PTSNVMIFDN YDPGNTYITN HNVELWSPAR GKRETILGGG
181 GAPGLTTVNV HAGAGYSGSG VAGYGGGVQA MVGDPNANYE MIARLDEERR RSDEYRMQWE
241 NERQKSLSLE DENDRLRREF ERYANDSKDK EKTFINRERN LAQYLSDEQR KMLDLWTELQ
301 RVRKQFSDLK THTEEDLDKQ KAEFTRAIRN VNNISRNAAF SAGAGDGLGL YGLEDGGDVN
361 RTTNNYEKVF IETIKRMNGT GGAGSASSAD LLEELRKIRG GGSSEGDAEL HKELMTKYEE
421 SIERNIELES RGDDSQRKIA ELEAELRRNR EKLNEAQGAL KKLHEMAQDS EKNVDGTVSI
481 KRTRSLSPGK TPLPPSEALR AVRNTFRNKD NDIQQLERKL KIAESQVKEF LNKFENADEA
541 RRRLDKQFAD AKREISNLQK SVDEAERNSR RTDDKLRASE AERVAAEKAR KFLEDELAKL
601 QASFQKSSTD DARKLRDEMD EHTNSIQEEF KTRIDELNRR VENLLRENNR LKSEVNPLKD
661 KYRDLENEYN STQRRIEEKE TQIRYSDDIR RNIQKDLDDL REKYDRVHTD NEKILGELEH
721 AQKAAHLAEQ QLKEIKIQRD DYQKQKDEHA RHLFDIRHKL ETEIKGRQDL EKNGARNNDE
781 LDKLRQTISD YESQINLLRR HNDELDTTIK GHQGKITHLE NELHSRSGEI EKLNDLNQRL
841 QKEKQDILNQ KLKLDGDVQA LKETIRKLEN ELEKLRNENK ELVGKEARAR DAANQQLSRA
901 NLLNKELEDT KQDLKHSTDV NKQLEQDIRD LKERLANIGK GGRISRDSTT GTDGGAFGDR
961 SSVADPSRTR GAAGSTVFVP AAEDIESRGG GEIDIPSSGD VIHGRDGRDG RDAGNRGTHT
1021 ITNTKERIER IEKNILDRYH DDELVEHKIR EVNDRWKREL ERLENEKDDL ERRIRELEDE
1081 LSQIGRGNDK TENDITELKR KHAAEIDKLK SDISALHDKH LSDLDDEKEQ YGKAVENLKS
1141 VEDDLRDKLN NLEKQLADSL NRENELEREK RDYDEKINSL YGQNQKIKDE WDDFRNDADK
1201 EIQKWKTDAY TVRSEAKALE TTNTALKAQL QAANDRIDHL TKTVNDHTSK VRDLTSQVRH
1261 LEDELADTKG NLVQKEMDLE STQNRLRSLE DQHSTLQSDA NKWRGELDAA LRENDILKSN
1321 NTNMETDLTR LKNRLKSAED ALKELKNSLS HAKTEKERLQ NAFREKTKQA DHLNQLASQF
1381 DTKLTKLRNE LQDTNDKLIT SDTERNALRN ELQKLSQELK FGNEQIQRKS DEYQTTIDDL
1441 AHSHRVSEDS RLNALQELEA RKYEINDLTS RLDSTEQRLA TLQQDYIKAD SERDILSDAL
1501 RRFQSSANRV INFHTFVDGG AGYVDGVPGG TSVIGGGPSA QRSGAYDPSS GGVIGSGISG
1561 GPGGSDFGRE IEIGRGDSDQ SDVAYPRSVP FPPSADFSSG RPGAASAGGR VINNLDGTTT
1621 VNMNGGFDIA NLEGTLQSLL NKIEKLEMER NELRDTLARM KKKTTETHTT INQKETRYRN
1681 IEDNLQDAEE ERRALESRLQ SAKTLLRSQE EALKQRDEER RQMKSKMVAA ELQARGKEAQ
1741 LRHLNEQLKN LRTDLDNAHT DIRSLRDKEE QWDSSRFQLE TKMRESDSDT NKYQLQIASF
1801 ESERQILTEK IKELDGALRL SDSKVQDMKD DTDKLRRDLT KAESVENELR KTIDIQSKTS
1861 HEYQLLKDQL LNTQNELNGA NNRKQQLENE LLNVRSEVRD YKQRVHDVNN RVSELQRQLQ
1921 DANTEKNRVE DRFLSVEKVV NTMRTTETDL RQQLETAKNE KRVATKELED LKRRLAQLEN
1981 ERRNSSQLSD GWKKEKITLL KKIELLENEK RRTDAAIRET ALQREAIEKS LNAMERENKE
2041 LYKNCAQLQQ QIAQLEMENG NRILELTNKQ REEQERQLIR MRQEKGQIEK VIENRERTHR
2101 NRIKQLEDQI AILRDQLDGE RRRRREYVDR SMVNDIGRLG SNVLGIRNSY GDNSIDAIIN
2161 GGSRSVGFYP RSTFASNPLT PPLGSSTPTH RPHVTDFRSA VDAGSSYRRP ISTIEDSGSV
2221 YGGSIRDRDS VYGGGGRDSS FGTRAGDSIS RAGVEPRDPS LVEIPSNEPP MTTSTHSQGG
2281 SRYDTLAPNR DDL
//