LOCUS VVC12406.1 2401 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Lin-5 (Five) Interacting protein protein.
ACCESSION BX284606-1108
PROTEIN_ID VVC12406.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="lfi-1"
/locus_tag="CELE_ZC8.4"
/standard_name="ZC8.4f"
/note="Confirmed by transcript evidence"
/db_xref="WormBase:WBGene00022500"
intron_pos 105:1 (1/17)
intron_pos 151:2 (2/17)
intron_pos 194:0 (3/17)
intron_pos 224:0 (4/17)
intron_pos 266:2 (5/17)
intron_pos 388:0 (6/17)
intron_pos 851:2 (7/17)
intron_pos 1362:1 (8/17)
intron_pos 1506:0 (9/17)
intron_pos 1567:1 (10/17)
intron_pos 1715:1 (11/17)
intron_pos 1799:1 (12/17)
intron_pos 1854:0 (13/17)
intron_pos 2114:0 (14/17)
intron_pos 2196:0 (15/17)
intron_pos 2275:2 (16/17)
intron_pos 2326:1 (17/17)
BEGIN
1 MFFSCGVNSS SPGRQLVVSE SVSEDNLHNP SSHALRTLSP VSPPTANSSS STSRSCSPVV
61 RAETIVAGKW THISGKVSVR PLTPSETESV LDRQRQKNRR SSRKDKLKMS THDDTRSSGG
121 GDGTIHIPSA DAKEPTPESP GSRSNYGEFY WDEYSRDTSG ENNYHHTSSF DDDLLLEIDS
181 SRGAAVARLD RTQDDLNKFR QRIDNNVEQQ REYSEMMAAL QNKVHEYRKH IAELEGRMVG
241 ARNRMLDDPT SNVMIFDNYD PGNTYITNHN VELWSPARGK RETILGGGGA PGLTTVNVHA
301 GAGYSGSGVA GYGGGVQAMV GDPNANYEMI ARLDEERRRS DEYRMQWENE RQKSLSLEDE
361 NDRLRREFER YANDSKDKEK TFINRERNLA QYLSDEQRKM LDLWTELQRV RKQFSDLKTH
421 TEEDLDKQKA EFTRAIRNVN NISRNAAFSA GAGDGLGLYG LEDGGDVNRT TNNYEKVFIE
481 TIKRMNGTGG AGSASSADLL EELRKIRGGG SSEGDAELHK ELMTKYEESI ERNIELESRG
541 DDSQRKIAEL EAELRRNREK LNEAQGALKK LHEMAQDSEK NVDGTVSIKR TRSLSPGKTP
601 LPPSEALRAV RNTFRNKDND IQQLERKLKI AESQVKEFLN KFENADEARR RLDKQFADAK
661 REISNLQKSV DEAERNSRRT DDKLRASEAE RVAAEKARKF LEDELAKLQA SFQKSSTDDA
721 RKLRDEMDEH TNSIQEEFKT RIDELNRRVE NLLRENNRLK SEVNPLKDKY RDLENEYNST
781 QRRIEEKETQ IRYSDDIRRN IQKDLDDLRE KYDRVHTDNE KILGELEHAQ KAAHLAEQQL
841 KEIKIQRDDY QKQKDEHARH LFDIRHKLET EIKGRQDLEK NGARNNDELD KLRQTISDYE
901 SQINLLRRHN DELDTTIKGH QGKITHLENE LHSRSGEIEK LNDLNQRLQK EKQDILNQKL
961 KLDGDVQALK ETIRKLENEL EKLRNENKEL VGKEARARDA ANQQLSRANL LNKELEDTKQ
1021 DLKHSTDVNK QLEQDIRDLK ERLANIGKGG RISRDSTTGT DGGAFGDRSS VADPSRTRGA
1081 AGSTVFVPAA EDIESRGGGE IDIPSSGDVI HGRDGRDGRD AGNRGTHTIT NTKERIERIE
1141 KNILDRYHDD ELVEHKIREV NDRWKRELER LENEKDDLER RIRELEDELS QIGRGNDKTE
1201 NDITELKRKH AAEIDKLKSD ISALHDKHLS DLDDEKEQYG KAVENLKSVE DDLRDKLNNL
1261 EKQLADSLNR ENELEREKRD YDEKINSLYG QNQKIKDEWD DFRNDADKEI QKWKTDAYTV
1321 RSEAKALETT NTALKAQLQA ANDRIDHLTK TVNDHTSKVR DLTSQVRHLE DELADTKGNL
1381 VQKEMDLEST QNRLRSLEDQ HSTLQSDANK WRGELDAALR ENDILKSNNT NMETDLTRLK
1441 NRLKSAEDAL KELKNSLSHA KTEKERLQNA FREKTKQADH LNQLASQFDT KLTKLRNELQ
1501 DTNDKLITSD TERNALRNEL QKLSQELKFG NEQIQRKSDE YQTTIDDLAH SHRVSEDSRL
1561 NALQELEARK YEINDLTSRL DSTEQRLATL QQDYIKADSE RDILSDALRR FQSSANRVIN
1621 FHTFVDGGAG YVDGVPGGTS VIGGGPSAQR SGAYDPSSGG VIGSGISGGP GGSDFGREIE
1681 IGRGDSDQSD VAYPRSVPFP PSADFSSGRP GAASAGGRVI NNLDGTTTVN MNGGFDIANL
1741 EGTLQSLLNK IEKLEMERNE LRDTLARMKK KTTETHTTIN QKETRYRNIE DNLQDAEEER
1801 RALESRLQSA KTLLRSQEEA LKQRDEERRQ MKSKMVAAEL QARGKEAQLR HLNEQLKNLR
1861 TDLDNAHTDI RSLRDKEEQW DSSRFQLETK MRESDSDTNK YQLQIASFES ERQILTEKIK
1921 ELDGALRLSD SKVQDMKDDT DKLRRDLTKA ESVENELRKT IDIQSKTSHE YQLLKDQLLN
1981 TQNELNGANN RKQQLENELL NVRSEVRDYK QRVHDVNNRV SELQRQLQDA NTEKNRVEDR
2041 FLSVEKVVNT MRTTETDLRQ QLETAKNEKR VATKELEDLK RRLAQLENER RNSSQLSDGW
2101 KKEKITLLKK IELLENEKRR TDAAIRETAL QREAIEKSLN AMERENKELY KNCAQLQQQI
2161 AQLEMENGNR ILELTNKQRE EQERQLIRMR QEKGQIEKVI ENRERTHRNR IKQLEDQIAI
2221 LRDQLDGERR RRREYVDRSM VNDIGRLGSN VLGIRNSYGD NSIDAIINGG SRSVGFYPRS
2281 TFASNPLTPP LGSSTPTHRP HVTDFRSAVD AGSSYRRPIS TIEDSGSVYG GSIRDRDSVY
2341 GGGGRDSSFG TRAGDSISRA GVEPRDPSLV EIPSNEPPMT TSTHSQGGSR YDTLAPNRDD
2401 L
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