LOCUS VVC12397.1 852 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Rab-GAP TBC domain-containing protein protein. ACCESSION BX284606-4111 PROTEIN_ID VVC12397.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="T23E7.2" /locus_tag="CELE_T23E7.2" /standard_name="T23E7.2k" /note="Confirmed by transcript evidence" /db_xref="WormBase:WBGene00020732" intron_pos 40:1 (1/13) intron_pos 69:0 (2/13) intron_pos 99:0 (3/13) intron_pos 255:1 (4/13) intron_pos 356:2 (5/13) intron_pos 509:2 (6/13) intron_pos 583:2 (7/13) intron_pos 679:0 (8/13) intron_pos 703:0 (9/13) intron_pos 737:0 (10/13) intron_pos 756:0 (11/13) intron_pos 778:2 (12/13) intron_pos 816:2 (13/13) BEGIN 1 MSEVDAQEEF HDAPEEAVIE IQKDFVAEIE QDNSNAQLVE EGDDQLVTAE ADDEKSAQQV 61 DEDRTEDQVP DITGTEYVDP MTTSMDGIED LPANDEAQVE ESAPADEPAP EEEKPQEEAP 121 AEEPAPAEEA PQEEVPAEEP VAEETAPAEE AAVEEPVVEE AAPVEEAPEA EETAPAEEPL 181 IEVAVEEAPA EEPVAEEAEP EAEKQEFELQ APPEGKRPRT PNDLDNPTAD EEPAAELEAD 241 AGSEVPPTPK TAASEKQSVP PTPKSAAPSE VPPTPKSAAP SEVPPTPKSA APSEVPLTPK 301 SAAQSSVPPT PKSAVPSEAP PTPRSAAPSD VPPTPKSNGH IANGSIPGTP SVAQERVEPE 361 PEPVAEEPEP VAEPEPEPEP VAEAEPEAEP AVEEEPAEEP EPAADETATE PTAEEAEPEA 421 VEESIEKTEV VEEESAPPAA RQSSPSPPPA RRRPQSPSPE RQRTSRHADR DITSYDEDSY 481 RAVPPPRMPT ATSFSSWSPP DKQSYTPISP FVSTANKYRN EYTSGSSYRP TNMYTSHFDD 541 IVATGAFSSA LYSTNRLIER SRSRTRERKQ AMRSQRSASN YYRYSSQAPA PLRAREYSTP 601 PTREISRAPS RNTSFVSFLD YSSAKQGELS RANSRTSIYG DSLSRSCSRA NVDAYLGGGR 661 LSRVDSYVRD IHTPYEYEVP STYDRYRSSS RGPSYSTING YTAYISSPSY VETESTRRMK 721 RYQRDTSPAM VRSMYEGRIG QLERSLSREV IQKDRLRTEY QQLSTKLDQA CRQMELLSPY 781 TPPNMEDHRL INRPEIRRSI AYTLDLRATG LPSTERWRLG NVVYGGLYRK KYDADLEKAV 841 QYYSSCAKKR RF //