LOCUS VVC12391.1 1545 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing
protein protein.
ACCESSION BX284606-1028
PROTEIN_ID VVC12391.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="pqn-65"
/locus_tag="CELE_T13H2.4"
/standard_name="T13H2.4f"
/note="Product from WormBase gene class pqn"
/note="Confirmed by transcript evidence"
/db_xref="WormBase:WBGene00004148"
intron_pos 24:1 (1/10)
intron_pos 85:1 (2/10)
intron_pos 178:1 (3/10)
intron_pos 212:1 (4/10)
intron_pos 315:1 (5/10)
intron_pos 376:1 (6/10)
intron_pos 625:1 (7/10)
intron_pos 1282:1 (8/10)
intron_pos 1436:1 (9/10)
intron_pos 1485:1 (10/10)
BEGIN
1 MPLGQALQEV PLGAVAGQLR VQKALYEKMD GMNGIAPESA STSGQTFMQD PAPPLPPKKA
61 APKRKKPTKA EIEAAGGNVS SVEKPKKPRA PSKKKAQGTV QQEHQMISMT SAHQGQTEFH
121 QPSHQSTHQP LPSVANLLPP LTGYQQQQQQ QQRPPSQQHH NGVVNNNTTT NGYGYSDVSG
181 NGGSSSSSSS VYSSYSYSMQ PTSDPPKKHQ SLASMLTPIT FGSSQPEATN TGSSQIYTDK
241 NQYHLYNDNN TYPHQPAMYS NQTSSNGYYG GYEDVSNNQF QQPDYPPLSV ESQVSCHSQE
301 SNITYHSSMP VTPISQQANN GSLYNPMPVT KDNRFSNSSS HIQQDHEDLS VEQFAQKYAF
361 PSDNFFEMQN SRDSQETNSA PLSMARASNA SPFDELGIYL DSGPSTSHTQ DDPFADIELS
421 DPPLSITPQV AQEPVQTTIM SNRVIKTPSS ETHPQSYANV QYVPMNPSLP VSSHSESQVR
481 STKKLPSNFK EDDIRHSTCP DNCNKCVSEK SNADISMQPS PASTIVTVPQ SQRMDQHLEQ
541 QRGVEQLAAT DDEQICYVKY LPHEISHTNL GRPRQQSKPS GVGVNGTSHG LTNQGPPPLP
601 PPKRSRAKPK KKNAFEQDMN ASSSGHAYQM QNSPEVSIGK LLKQQHLNRP NQFNNISGQS
661 QIDLATLQQS VMLSPKLQRY SEPQTMQKFS HHQKEAQVHE KKNHMQQGSA KQEPIQHRQV
721 NLQQVPTQQS SGPAHQSTIH YAPMKQQIKL TSLQSNKTSQ EHQSTTLQAP VEEAPSDQFP
781 ENFLEQPDSP DKVTEVINNV VASVLSSPDE FRGQKQFTKT EKHLLDGTSK PTPKKQSHVD
841 RRSRGSFVHY VQGKQQMISQ QQNRNAYQVQ QQQQPNASSL STMNEQYEVV LDNTNLQNPM
901 SEQQVQMNYQ TSIVQQTSVE QQGPLQLQNQ IQVTNQQTHR VQYQHHPVQH NQRNGPTKAA
961 PRKRTPKPAP VQSRSVALHE RAQMIVDFAK TQPADQEDQT VQLQDHEHQY NSQQQPEYQH
1021 QPLVQMQEQS NEQQSQVFQH QHQHQAQQEL AENQGSMGMA TQQQQCRQSQ LQQQLQQPPQ
1081 QQMQIQQQYQ NVGPSHIQRQ NVAPQRVQQQ PMQYAQQQQQ PMMQMAQQRS MQEQYVQQGQ
1141 VQRTGATHTV LMTSPPMNHH ESQANVLRVA PKQTIVKSAD PKPEDEAKIL KILKDKLASD
1201 DGQNAPKMSP VLRVKHIRET INIIAALPSL TIEELFDKAD TPPPDEYMEE YMDFYDKITH
1261 LMKDEPCVPE INVEDVLSTP LLEPALHGRF RKRLIAIREG RTTVTTFKKR KTASGPEGDA
1321 KKRKPTNNHT NGMHTPDASP AQGTSSGQSS SSGMQSQSLS ITTGMSSSSS SPPASDFDIS
1381 THLITPPQEH SSPLTTPPII NHEYVQQVSS PVDIFSQPST SEPGPSSRPI RTGVHHREEA
1441 LNEDDNGSPI LYDDPIMGYV GTNRFVSLDM DDMIDDVMKS DDTEEMLVHN LQRSIFDVGK
1501 SFEDDDEDDT NVIKLDTNTD NHRPATPSVG ILDDLNSVLF DPIMM
//