LOCUS VVC12380.1 1529 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Rab-3-interacting molecule unc-10 protein.
ACCESSION BX284606-1679
PROTEIN_ID VVC12380.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="unc-10"
/locus_tag="CELE_T10A3.1"
/standard_name="T10A3.1c"
/note="Confirmed by transcript evidence"
/db_xref="WormBase:WBGene00006750"
intron_pos 24:0 (1/27)
intron_pos 40:2 (2/27)
intron_pos 85:1 (3/27)
intron_pos 109:0 (4/27)
intron_pos 171:2 (5/27)
intron_pos 284:0 (6/27)
intron_pos 332:1 (7/27)
intron_pos 362:0 (8/27)
intron_pos 380:2 (9/27)
intron_pos 441:1 (10/27)
intron_pos 474:2 (11/27)
intron_pos 534:1 (12/27)
intron_pos 572:1 (13/27)
intron_pos 614:0 (14/27)
intron_pos 682:1 (15/27)
intron_pos 723:2 (16/27)
intron_pos 766:1 (17/27)
intron_pos 804:1 (18/27)
intron_pos 915:0 (19/27)
intron_pos 963:0 (20/27)
intron_pos 1100:1 (21/27)
intron_pos 1123:2 (22/27)
intron_pos 1228:2 (23/27)
intron_pos 1305:1 (24/27)
intron_pos 1351:2 (25/27)
intron_pos 1419:1 (26/27)
intron_pos 1466:0 (27/27)
BEGIN
1 MDDPSMMPDL SHLSAEEREI IENVFKRQKD EEAKETQISQ KASEELSELD KQITERKETS
61 KKLVGTQDDA ICQICQKTKF ADGIGHKCFY CQLRSCARCG GRAQSKNKAI WACSLCQKRQ
121 QILAKTGKWF QPEEQPQPKI SGSEPSPSPQ PLTDDNVPEP QQRRAEPPDK MNTPNYQNNQ
181 QPRGMGMQPN HNQTQQNFMN QNQNSNQHPN QNHNQNQMQN PHQNQNHVQN NHQGANNHQQ
241 NNRRAMQQQP MSQNQANQIN QMNQNQNQQQ SHNQNMTQNQ RNQTGPQNQQ RTNDSRTMKQ
301 TPQQQPSQYQ NNVGAAHQHH NQHGQQEQHH QQMNEQRTDN NRMRENTNGQ GGMFNRQPSL
361 EQTTPMNKYN HVEDDGMNQR PTFYTGNSEN DQRQFDGQMQ QGSQQNNQNQ NQNNRNLRKN
421 TVSRVTEEDY ASSSNFESKK QRNNSSQSQS NTQGVRACPS TDDHLNRVKN RLHRQLRSMS
481 SSEEDIIAGG GGNTLKMSTS AVVASGGKTA FHDDMGASNV QRLSEECNSE KGLYLLRYIY
541 GDHKNSDSSS LGAGVGGSGG GGVLSGNSVL KNMQANRRRD KSLSLSPSRN DHFGTGSISG
601 GDLLASRIRT FLSHPVTWQP SADQKKLIGH MILHRTENSA ANGDLGLKIV GGRRTDTGKL
661 GAFITQVKPG SVADTIGRLR PGDEVVEWNG QSLQNATYEQ VYDSIAASRY DTSVELIVSR
721 SAIIPGGDDF LNLTPSQMSS SAYSRVPSAY PSQFQRQLPN PDLFLDIHPA LQQLSLPHSQ
781 SAVFPHNNTL TSRNRSTSSY YYSDVPDLGV PSNREMQESQ AFGTGHIFGR IEVSFVYSHH
841 DRQLSVALVR GFDLPPRSDG TPRNPYVKIF LLPDRSEKSR RQSAVIAETL MPVWDEVFYY
901 NGLTEPMLLQ RVLELTVWDY DKFGTNSFLG ETLIDLASVP LDGEHSLMCI LVDMDDDNPL
961 RTRLKLRKAS YNAPTRRPQS ELNYYDHSSN YYDHISQNID KQPHHHHLAP NDEENDEYID
1021 DDELENDIDL ATGGGARKSR TYRREKGMHG GHGYADWTQN HQRQSGYTSD HGYGRQNMIG
1081 RAYNRRQQRR PRSATALSQM EREDMYDPTR KHRDDNEYSM RESVRHGSQY YLGDQPLYED
1141 GRYKISQGQM TPKQHNQQHQ PHPLSQAHQQ QQTAGVQPQH HQGFQQQQHP QQPNQQMQQM
1201 QPPMPNQGYY SDGSETLSVH STNSMPTTMT TVNRRNMNAN NTSNDNTSFA ETPTANTNRV
1261 PIKETKQNSL ASSSSVAGGG SAANNVMKER KKSLMTRFIP GRGAEGKRTG FARSEEVGIP
1321 GNLSSDRLTE PTPPFLKQAS KESTDSAHSD NWLPVLADGP LGTFVDNLGP GQVVGRQVLA
1381 SPVLGEIQIA LMAGRSGIDV EIIKAKNLVV KPGVKVCPAP YVKVYLMEGK QCIAKAKTNA
1441 ATKTTSPLFQ QHLIFNDSPK KKTLQVTVLG DYGRMERKVF MGISQIRLED LELGSQPLIG
1501 WYKLFHSSSL AGTGPVRKDS DVSVGGAQQ
//