LOCUS VVC12370.1 1047 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans guanylate cyclase protein.
ACCESSION BX284606-3243
PROTEIN_ID VVC12370.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="odr-1"
/locus_tag="CELE_R01E6.1"
/standard_name="R01E6.1"
/note="Confirmed by transcript evidence"
/db_xref="WormBase:WBGene00003848"
intron_pos 55:2 (1/21)
intron_pos 158:0 (2/21)
intron_pos 183:0 (3/21)
intron_pos 215:1 (4/21)
intron_pos 273:0 (5/21)
intron_pos 297:0 (6/21)
intron_pos 338:1 (7/21)
intron_pos 389:0 (8/21)
intron_pos 420:1 (9/21)
intron_pos 444:2 (10/21)
intron_pos 472:0 (11/21)
intron_pos 569:0 (12/21)
intron_pos 593:0 (13/21)
intron_pos 651:1 (14/21)
intron_pos 715:1 (15/21)
intron_pos 771:2 (16/21)
intron_pos 818:2 (17/21)
intron_pos 860:0 (18/21)
intron_pos 883:0 (19/21)
intron_pos 932:0 (20/21)
intron_pos 1007:1 (21/21)
BEGIN
1 MLKSLLIIVI VFLHRELCDG IQLILFDNWP SAQNVCASAV ADATANGQCT TKSIQINQQH
61 GCSGDNSVKS ASYAINAVAS RTSGELDFVF VGPTCTTDIR TIGDFAEIWK SPVIGYEPVF
121 EARGVQELTS VINVAQFSVG GVAETLVFLM KELEQVEITL VGSVKVLPNG LSLSNDLRSY
181 NEIMNSFKIR EYVEVDENDV DWTKVDQKIK RGARMIVVCA DFYDIYSAFY NIGIRSLSGF
241 RFIIVVILNK PPDEILNQPN VKNLLYGSNA FIISPLQEQY SDAFSIMQDV IPNLADDQFT
301 TFLRIYHACY AYCVGSVNGA ETQTDNYHTA MSGKAVTTKY GTFTFDNSGS VLTNYAVFTI
361 NPAEMTFESI LTLKSVAKSC DTYNCFQLSP NKTSDLLWTL KDMDPPDDCV AKSSCVNYIP
421 HIIAAVVIVT IIVIAIVIIV KQRRHKLNIY KLTWKVPKES LKIIVNKNAD AKMQRELENR
481 ASNTDNAAAL TSRRRVFGSY ALVGTQRAEY VQFKQIRKIN FPETTLDYLY SLKQLQHDNL
541 AKFYGIQVND DIMTMTILHT LVERGTLEEF CLDRDFGMDD TFKSAFMRDI LKGLQYLHKS
601 SIGYHGHLQA STCLIDINWV LKLTLYGVSN FMSDQLDAEN IKVPEQAAHM ITYPQYVCFP
661 PEHIREYDDS GKQPPRVVRG SPKGDIYCVG MIFYMMVERE DPYHLIHSVE RPNATLIKQI
721 LNENHMPRIT DDYRQENMLL EMCKECWDRN PDKRPTIKKL IESISTVYPL SKGNLVDQMI
781 RMSEKYADEL EQMVAIRTAD LADAQMQTMR LLNEMLPASI AKDLKNGLIM PPRSYESATV
841 MFVQICDFNA LMKRSSPEQV IAFLNDIYDQ FDTVIKRHDA YKVETTGETY MVASGVPHEN
901 EGRHIFEVAE ISLEIREISY IYVLQHDKNY KLRIRIGFHA GPIAAGVIGI RSPRYCLFGD
961 TVNFASRMQS NCPPNQIQTS EITARLLFDS HEYKFVKRGI VHVKGKGEVN CYWLNEHLHE
1021 ETEPPLPPMT PVPNPLRRGS IVPLQKA
//