LOCUS VVC12360.1 1894 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans VWFA domain-containing protein protein.
ACCESSION BX284606-338
PROTEIN_ID VVC12360.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="K06A9.1"
/locus_tag="CELE_K06A9.1"
/standard_name="K06A9.1g"
/note="Confirmed by transcript evidence"
/db_xref="WormBase:WBGene00019435"
intron_pos 38:1 (1/12)
intron_pos 76:0 (2/12)
intron_pos 104:0 (3/12)
intron_pos 132:2 (4/12)
intron_pos 158:2 (5/12)
intron_pos 222:1 (6/12)
intron_pos 1701:1 (7/12)
intron_pos 1711:1 (8/12)
intron_pos 1738:0 (9/12)
intron_pos 1802:2 (10/12)
intron_pos 1828:2 (11/12)
intron_pos 1855:1 (12/12)
BEGIN
1 MKVPRGIGLV FIFAVAAALV AGLILTIVLV SRPSPAEPFT GRVITVGICN SGSEPSKASS
61 FRFKRDATTS CSFDANRDQL KNFLSSSAAD TSFIVMSYSD KPSPSTVLPR DQAIELLNSM
121 KKDGSKTIQQ APAFASYDPK AYENSDLVFF TPCKTDYTGY DADMAAVRTT INNVQTKKYV
181 IVSLAMDQGN MTQKYGDLNT HNIGNNATDI TNDINNVLNI TATTLGPTTT TITPTTTVVP
241 ASTSTQPAPA SSPTTQPAPA TSPTTQPAPA TSPTTQPAPA TSPTTQPAPA TSPTTQPAPA
301 TSPTTQPAPA TSPTTQPAPA TSPTTQPAPA TSPTTQPAPA TSPTTQPTPA TSPTTQPTPA
361 TSPTTQPTPA TSPTTQPAPA TSPTTQPAPA TSPTTQPAPA TSPTTQPAPA TSPTTQPAPA
421 TSPTTQPAPA TSPTTQPAPA TSPTTQPTPG TSPTTQPAPA TSPTTQPSPA TNPTTQPSVS
481 SSASTQPAPA TSGTTQPAPA TSATTQPAPA TSATTQPAPA TSPTTQPAPA TSATTQSVPV
541 VTTQTTMGTS PTTAGISSSP AATSPSTAVT SPSSLGTSSS PLPSSISTSA LPIASSSASS
601 SPSAASSTTP VVLSSSTIQS SSGTFPSSVA SSPSTVGSTS GAASSSSYAT VSTIAGSTGS
661 TITPVPGSSS TIGSSTPSAS SSSSGTMSTI SGSTGSTVTV VPGSSSTFAS STPIASSSSP
721 GSTVTVAPGS SSTYGSSTPS ASSSSSGTMS TNSGSTGSTV TVAPVSSSTF GSSTPIASSS
781 SSGSTVTVVS GSSSTYGSST PSASSSSAGT ASTISGSTGS TATIVPGSSS SVGSSTQSAS
841 PSSPGTMSTV SGPTGSTVTV VPGSSTSPAP SSSPNPSSSP ASTGSTITIS GSSSIIVSTV
901 SGSTVSGSTG TSQSTLASST ATPGSSSTVP SSSSPQPSSQ SPAPNTGSTT PSQTSSQSPS
961 PSMNPSSSTP TGSSQSTITP EGSTASSPTG STGSTFSVAT EVTSQSTVPS GSSLGTQSTN
1021 SSPSPSSLSP STSGMSTLTS EPSPSSTQSS GAQSTLTTPS PNPSQSTSSL ESSTSGATTS
1081 SGSAGTTMTS PSQSSSVGSS QGSTSPAAST TSGEMTSQGS TQTPGSSVST SAAILTSTQQ
1141 SVSTNSPGST VTRPSTVSGS TSSGSTVTVG STEASTSGSS VASSSPAPST SQNPNPSTSS
1201 GSSMITQSPY PSQSTSPVES STTPSPGSPG TTLTSTSPSP SQSTTIGSTQ GSTSPGISTT
1261 SEEMTSQGST QTPGSTGSTV TQPSTVSDST SSGSTVTVGS TEGSSSPIPS TSQNTNPSTS
1321 SGSSMSTQTP QSSQSTSPVE SSTSGATSSS GSPGTTLTSI SPSPSPSSTI GSSQGSTSPV
1381 VSTISQGSTE TPGSTGSTVT KPSTVSGSAS SGSTATMGST EASSTSGSSF PTMSSNSPVP
1441 STSQSPNPST SGGSSTSPNP SQSTSPSTSG ATSSPGSSGT TLTSISPSPS QSSTIGSSQG
1501 STSPVVSTTS GDMTSQGSTQ IPGSTGSTVT QPSTGSGSTS TSGEITSQGS TQTPRSSLST
1561 SPAISTSTQQ SVSTNSPGST VTQPSTVRGS TSSGSTVTTG STEGSSTSGS SSATSLSSSS
1621 PVPSTSQSPN PSTSGSSTPT PNPSQSTSPV VSTTTGEMTS HGSTQTPSTI GSTVTQPSTV
1681 SGSNSSGSTV TIGSSEASTS GSSLATTSAP KPSVTCLFMY DTQSKEIDQT AINTYKTYFN
1741 FALLVASKLN NESILTGYID NFGYSAGLND HQYYPTDDYN GIKSVPFPID GTDDDIDLDL
1801 KDVDKSLATA DWTPPVADQT CMIFISAAPE DEYGGTTIKS TYTYFETVVG VLVGGAKSIP
1861 GLSIDKNIVI TNNTMNDRDA SAVVSKLLEL LPTA
//