LOCUS VVC12356.1 1465 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Serine/arginine repetitive matrix
protein 2 protein.
ACCESSION BX284606-347
PROTEIN_ID VVC12356.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="H11E01.3"
/locus_tag="CELE_H11E01.3"
/standard_name="H11E01.3b"
/note="Confirmed by transcript evidence"
/db_xref="WormBase:WBGene00019188"
intron_pos 9:2 (1/10)
intron_pos 56:1 (2/10)
intron_pos 115:0 (3/10)
intron_pos 163:2 (4/10)
intron_pos 182:2 (5/10)
intron_pos 217:1 (6/10)
intron_pos 255:2 (7/10)
intron_pos 300:1 (8/10)
intron_pos 1386:0 (9/10)
intron_pos 1423:2 (10/10)
BEGIN
1 MMDMMLKNRE AQLMKMAELR KKLDAAEKVE CCRRIRTGQS PESYRQGKPS RSLSRNRAGQ
61 SGGGGRQRRY SNSFEDRDFV QRIEDRNTDP VEQNTKDPYK RLSANAKRFN YLHKLDDNTL
121 IAYKDNLKKQ LQRLERFREI SFGPHSVARQ PPPQQASWFF RRRSLPSLTA SAPGNTLKEP
181 LRSVLNMRGR KATTGNKLNA SHDSRTSCPP TTRKRKDSNG RLPPINPHKN RVPTKPPAPV
241 SLQQITTRLP PAAKKPAPSR GRPSNKRQTT TTTTTTITSV SKSPQISDTN TLPTLPSVTG
301 RGIFTGAAAA ATAAAIGTAA INMDTLIDKE PEPSPPRTPV LETQKTFDRT SPTDGVQVPD
361 EVPPEILDKL ADESEDVEEK LAEQEEQEFI PRQIVLDNAD PSHGDYEDSD SEPEYAEEDR
421 EPLAVQVQLE HQVDVSPPTS NVTQDSPKEM SYQHSEPSPA LPSPDASVPS EHERFARSPP
481 TLVFTEQSTE DAPESPNEVV HHVQTEAQQS PVIDVHSTHV VEHFDTHDES PQSPVLSVHG
541 GEEGYEDHHD EAPVLSVHTD HKAHSEDVPQ SPVQSVHSSH ASEHIDEAPQ SPVPSVHSSH
601 ASEHIEQEAL PSPVASERDV PSAESPLVQS ENFEHHAEVH SFHASEHIDE ALPSPVQSVH
661 SSHDHHDRSS PVASEPAARS PSVQSSRTSE HFEHRGEVPQ SPSSNQFHSS EHIEEARQSP
721 VTNQESVHSP HASEHFEHRE VVPHSPAASQ EEFGRSPSVH SPHVSEHFEH HEEAQHSPVA
781 SQEEAARSPS VHSSHASEHF EHHEEAQDSP VASQEKAARS PSVHSSHASE DSEHRQEIQH
841 SPAASQNEAA RSPSVHSSHA SEHIENHGES LQSPVASMAG SEHHNMAESS EYTTSEKEIS
901 PSIFSSHTSE QFEQQSQNSP VASERDNRSP TFESSVTMQA AAPLSPAASD HAEQARESPS
961 FERAPSLHSQ LSGNLEHDDE NSAVVEAGQE PATQSPIPLE QEGRFERAAS VNSYQASESF
1021 ENQEATVVEH HAGALQSPVA SEKEVSEAIS QPAAEPAAPS PISSEVEAHS EHHHTQEEIP
1081 IVQTSEHIDL TDVPRSPAFS MNDSHHEDQL SHEAAPHSPV AFTEPRVPSV HTSDTEEESF
1141 EVQHHAGLTQ EYAARKSPTE MDLYNPSRDN QESPVMSETE AIPIVDRIDL EAYHNSPTKE
1201 STSPVTVNPV EVRVSADEVA EHLASPHQNF EDEPSHLVDE SEVPNNFETV PEQEAYAPSQ
1261 DAMMTSIYQP GSDTETREWD EGEHHVKEST THSEHTDGNT HTSVQETITT ITDNGHDADN
1321 ISTDSLVIHE PAADNQMTQS IYQPHSDNDD DDDKVTEKEW DEGNKHVHEI TEEHTDESGK
1381 HFTETVTTTT TTVIKSGDDM KNNNDEEDGS DEERDKIIEE EGEHGSNGNL VRETITTTTH
1441 TVTSGGLPEG GILVDDGDET NISSL
//