LOCUS VVC12352.1 1956 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Myosin-11 protein.
ACCESSION BX284606-622
PROTEIN_ID VVC12352.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="nmy-1"
/locus_tag="CELE_F52B10.1"
/standard_name="F52B10.1b"
/note="Confirmed by transcript evidence"
/db_xref="WormBase:WBGene00003776"
intron_pos 44:2 (1/17)
intron_pos 109:0 (2/17)
intron_pos 161:1 (3/17)
intron_pos 212:0 (4/17)
intron_pos 243:0 (5/17)
intron_pos 297:1 (6/17)
intron_pos 345:1 (7/17)
intron_pos 503:1 (8/17)
intron_pos 877:0 (9/17)
intron_pos 942:0 (10/17)
intron_pos 1134:2 (11/17)
intron_pos 1173:0 (12/17)
intron_pos 1277:0 (13/17)
intron_pos 1507:0 (14/17)
intron_pos 1859:0 (15/17)
intron_pos 1912:2 (16/17)
intron_pos 1946:1 (17/17)
BEGIN
1 MGDLQYLQVQ RAAVADPATL AAWAQRKLCW VPDQNEGFLI GSIKRETNDE VLVELVDTSR
61 QVTISRDDVQ KANPPKFDKI EDMSELTYLN EASVLHNLKD RYYSSLIYTY SGLFCVVINP
121 YKKLPIYSED LIEEFKGKKR HEMPPHIFAI ADTAYRSMLQ EREDQSILCT GESGAGKTEN
181 TKKVIQYLAH VAGATRNKSL NAAAQQNIVQ KGELEHQLLQ ANPILEAFGN SKTVKNDNSS
241 RFGKFIRINF DMSGYISGAN IEFYLLEKSR VLRQAQDERS FHIFYQILRG CSAKEKSEYL
301 LEGVDNYRFL VNRGITLPNV DDVQEFHSTI NSMRIMGFAD DEISSIMRVV SAVLLLGNLE
361 FTQEKKSDQA MLQDDRVIQK VCHLLGLPVI ELQKAFLRPR IKVGREFVNK AQNQEQAEFA
421 VEAIAKASYE RLFKWLVTRI NKSLDRTHRQ GASFIGILDI AGFEIFDINS FEQICINYTN
481 EKLQQLFNNT MFILEQEEYQ REGIEWDFID FGLDLQPTID LIEKPMGVLA LLDEECLFPK
541 ANDKSFVEKL QKTHNKHPKF IVPDMRSKSH FAVVHYAGRV DYSADQWLMK NMDPLNENVV
601 GLMQNSTDPF VAGIWKDAEF AGICAAEMNE TAFGMRSRKG MFRTVSQLHK EQLTKLMTTL
661 RNTSPHFVRC IIPNHEKKSG KINSNLVLEQ LRCNGVLEGI RICRQGFPNR VPFQEFRHRY
721 EILTPDVIPK NFIDGKESVR KMITALDIDT NLYRIGQSKV FFRTGVLAHL EEERDLKLTA
781 LIMNFQAQCR GFLSRRLYTR RQQQSSAIRI IQRNGLAYLK LRNWQWWRLF TKVKPLLQVT
841 RTDDEIRAKD DELRATKERL LKMEHDFREN EKKLDQVIVE RAVIQEQLQQ ESENSAELDD
901 IRGRLQTRNQ ELEYIVNDMR DRLSEEEQQN EKNNDERRKQ METVRDLEEQ LEQEEQARQK
961 LLLDKTNVDQ RLRNLEERLV ELQDAYDKLL KEKRLLEEKV EGLTTQLLDH EERAKHGVKA
1021 KGRLENQLHE LEQDLNRERQ YKSELEQHKR KLLAELEDSK DHLAEKMGKV EELNNQLMKR
1081 DEELQHQLTR YDEESANVTL MQKQMRDMQT TIDELREDME TERNARNKAE MTRREVVAQL
1141 EKVKGDVLDK VDEATMLQDL MSRKDEEVNA TKRAIEQIQH TMEGKIEEQK AKFSRQVEEL
1201 HDQIEQHKKQ RSQLEKQQNQ ADQERADMAQ EIALLQASRA DIDKKRKIHE AHLMEIQANL
1261 AESDEHKRTL IDQLERSRDE LDHLNRVREE EEHAFANMQR RLATAEGQIQ ELNEQIQEET
1321 RLKIANINRA RQLEDEKNAL LDEKEEAEGL RAHLEKEIHA ARQGAGEARR KAEESVNQQL
1381 EELRKKNLRD VEHLQKQLEE SEVAKERILQ SKKKIQQELE DSSMELENVR ASHRDSEKRQ
1441 KKFESQMAEE RVAVQKALLD RDAMSQELRD RETRVLSLLN EVDIMKEHLE ESDRVRRSLQ
1501 QELQDSISNK DDFGKNVHEL EKAKRSLEAE LNDMRVQMEE LEDNLQIAED ARLRLEVTNQ
1561 ALKSESDRAI SNKDVEAEEK RRGLLKQIRD LENELENEKR GKSGAVSHRK KIENQIGELE
1621 QQLEVANRLK EEYNKQLKKN QQIIKEYQIE CEEARQAKED IAALLREADR KFRAVEAERE
1681 QLREANEGLM QARKQLELEN DELEELRAKG GGISSEEKRR LEAKIAQLEE ELEEEQSNCE
1741 LAIDKQRKAQ VQLEQITTDL SMERTLNQKT EAEKQSLERS NRDYKAKITE LESGAQSRAR
1801 AQMAALEAKV QYLEDQLNVE GQEKTAANRA ARRLEKRLND TTQQFEDEKR ANEQAKELLE
1861 KSNLKNRNLR RQLDEAEDEM SRERTKHRNV QREADDLLDA NEQLTRELMN LRGNNRRRAD
1921 MRLRRGFDVP GSSDNLAREE ENESNVSGSE HGMSVN
//