LOCUS       VVC12340.1              1339 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Intermediate filament protein ifc-2 protein.
ACCESSION   BX284606-129
PROTEIN_ID  VVC12340.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="ifc-2"
                     /locus_tag="CELE_M6.1"
                     /standard_name="M6.1e"
                     /note="Confirmed by transcript evidence"
                     /db_xref="WormBase:WBGene00002056"
     intron_pos      11:2 (1/23)
     intron_pos      46:0 (2/23)
     intron_pos      74:1 (3/23)
     intron_pos      101:0 (4/23)
     intron_pos      146:1 (5/23)
     intron_pos      183:1 (6/23)
     intron_pos      255:2 (7/23)
     intron_pos      322:1 (8/23)
     intron_pos      362:0 (9/23)
     intron_pos      446:1 (10/23)
     intron_pos      477:0 (11/23)
     intron_pos      697:0 (12/23)
     intron_pos      731:1 (13/23)
     intron_pos      786:0 (14/23)
     intron_pos      823:0 (15/23)
     intron_pos      988:0 (16/23)
     intron_pos      1044:0 (17/23)
     intron_pos      1097:0 (18/23)
     intron_pos      1205:1 (19/23)
     intron_pos      1242:0 (20/23)
     intron_pos      1266:0 (21/23)
     intron_pos      1294:0 (22/23)
     intron_pos      1331:0 (23/23)
BEGIN
        1 MLVPSDSGGK KRENHVVPSN VVKGNECKLK EAPLCTLIVS FTDDEAKDVT SAHVFTMTTP
       61 QLYPQTRKTV YKNGSSSQMS LTSTPFSTDD ERYSGYTNSA MSPPLQKQLI QEVSLSYSAP
      121 YTSTVKPSRH DLPLAFSPYS LDSEIEDLHS HTYSQLSNRS NGNKVESAER IYTASRKETE
      181 FPAKADPIPY FSAQSAIKAG RESPSYTTRS TPTPRQTPIS FDQASTARLD SGLSQNLIVS
      241 ESTTFEELTT ITTSNNRTTR KKEIKTEMPT VNALTKQFEI SSQQEKVVPL KPRKSSNVDY
      301 NGNGNSRSRV VVIDKSQMKS HKNGTYTPNR SAIVYSPGGI LTTTIVDIEP ARFGRRTEEY
      361 KIQEEYIVQR YDNGSSPNYQ RQEQGYQQQQ QHRSREYKTH RQEKQENYNQ RSYSATENRE
      421 VDAPVDTSPI DVVKNVIDRW ETKIGGTTTR FYASDQQLRS VSRVDMNDNV PRSAQEKIIV
      481 HQRSESQPTE RVIPISPLPH RVEPTRTTQS GGLLQTYEEL KTVVVKQSSD QTPQKIVPRA
      541 QSPVTSPVFK ETILSPPPIP TPSPTSDIAE EVLRTDETTQ HTAITMHSIV TKEVKQEAKE
      601 KINSVTDNAE MKEKVVEIAK NVEYEWEKKP LTPTPTPIPP QQQEVKQEEL KVENKIENDQ
      661 NEVHLHKFLD RDYRIKTYEE YSTTKRLRDR SQPPERPPTS YSSYSDRSRS IDRTYERRVL
      721 GSGMSRTYSE GRGLASGTYA SGFGQLVSGM SSAGAICTTQ IRDAREREKR EIGLLNDRLA
      781 DYIEKVRFLE AQNRCLSHDI DILRNGFSGG GHVSGLFDAE INQAKHILEQ TTAHRSTFER
      841 DITGLSAEIE VFRKKWLDAV NAVKAHREDH DVDLDRLAKI EAEISLFKRK IRIVEEDVIR
      901 IRRENDGIYN EIARIKQLTH NEIALKNERS LNVSDLLQRI NLLQTENNVR IEQELVFIRR
      961 DTTADNRDYF RHELQAAIRD IRADYEAISI RNRQDIEVWY REQIRKIQDE SVRVNPDLYK
     1021 EELISIRTTV TNVRSRLAEV EGRNFFLERL IDDLKNNEEA KFFEISLAER DAQIATLRDQ
     1081 CTELSIQMEK LCDNEISLRA EIERYRILLN GANVTTYTSN THGSGSGIAV GGVVGGSTRV
     1141 ISQTTRTHSS SNTSYSNVPA SRGGYSISGN VGGISVGGTI GSHGASAHAT GGIIGSGVQA
     1201 HRGSVSSLIT DKPRDRVHDE KGVDQSGRHF HSWYLGTISI NQVTPSYIEL KNICKIRRVD
     1261 VGGFRIEQSV NGQVLGSAQI NVPLILDPQE VVRFNHRHGK YLGQFFMDVD AFDNSTVART
     1321 SMYNYTEPHE ERAWFVYLD
//