LOCUS VVC12340.1 1339 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Intermediate filament protein ifc-2 protein. ACCESSION BX284606-129 PROTEIN_ID VVC12340.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="ifc-2" /locus_tag="CELE_M6.1" /standard_name="M6.1e" /note="Confirmed by transcript evidence" /db_xref="WormBase:WBGene00002056" intron_pos 11:2 (1/23) intron_pos 46:0 (2/23) intron_pos 74:1 (3/23) intron_pos 101:0 (4/23) intron_pos 146:1 (5/23) intron_pos 183:1 (6/23) intron_pos 255:2 (7/23) intron_pos 322:1 (8/23) intron_pos 362:0 (9/23) intron_pos 446:1 (10/23) intron_pos 477:0 (11/23) intron_pos 697:0 (12/23) intron_pos 731:1 (13/23) intron_pos 786:0 (14/23) intron_pos 823:0 (15/23) intron_pos 988:0 (16/23) intron_pos 1044:0 (17/23) intron_pos 1097:0 (18/23) intron_pos 1205:1 (19/23) intron_pos 1242:0 (20/23) intron_pos 1266:0 (21/23) intron_pos 1294:0 (22/23) intron_pos 1331:0 (23/23) BEGIN 1 MLVPSDSGGK KRENHVVPSN VVKGNECKLK EAPLCTLIVS FTDDEAKDVT SAHVFTMTTP 61 QLYPQTRKTV YKNGSSSQMS LTSTPFSTDD ERYSGYTNSA MSPPLQKQLI QEVSLSYSAP 121 YTSTVKPSRH DLPLAFSPYS LDSEIEDLHS HTYSQLSNRS NGNKVESAER IYTASRKETE 181 FPAKADPIPY FSAQSAIKAG RESPSYTTRS TPTPRQTPIS FDQASTARLD SGLSQNLIVS 241 ESTTFEELTT ITTSNNRTTR KKEIKTEMPT VNALTKQFEI SSQQEKVVPL KPRKSSNVDY 301 NGNGNSRSRV VVIDKSQMKS HKNGTYTPNR SAIVYSPGGI LTTTIVDIEP ARFGRRTEEY 361 KIQEEYIVQR YDNGSSPNYQ RQEQGYQQQQ QHRSREYKTH RQEKQENYNQ RSYSATENRE 421 VDAPVDTSPI DVVKNVIDRW ETKIGGTTTR FYASDQQLRS VSRVDMNDNV PRSAQEKIIV 481 HQRSESQPTE RVIPISPLPH RVEPTRTTQS GGLLQTYEEL KTVVVKQSSD QTPQKIVPRA 541 QSPVTSPVFK ETILSPPPIP TPSPTSDIAE EVLRTDETTQ HTAITMHSIV TKEVKQEAKE 601 KINSVTDNAE MKEKVVEIAK NVEYEWEKKP LTPTPTPIPP QQQEVKQEEL KVENKIENDQ 661 NEVHLHKFLD RDYRIKTYEE YSTTKRLRDR SQPPERPPTS YSSYSDRSRS IDRTYERRVL 721 GSGMSRTYSE GRGLASGTYA SGFGQLVSGM SSAGAICTTQ IRDAREREKR EIGLLNDRLA 781 DYIEKVRFLE AQNRCLSHDI DILRNGFSGG GHVSGLFDAE INQAKHILEQ TTAHRSTFER 841 DITGLSAEIE VFRKKWLDAV NAVKAHREDH DVDLDRLAKI EAEISLFKRK IRIVEEDVIR 901 IRRENDGIYN EIARIKQLTH NEIALKNERS LNVSDLLQRI NLLQTENNVR IEQELVFIRR 961 DTTADNRDYF RHELQAAIRD IRADYEAISI RNRQDIEVWY REQIRKIQDE SVRVNPDLYK 1021 EELISIRTTV TNVRSRLAEV EGRNFFLERL IDDLKNNEEA KFFEISLAER DAQIATLRDQ 1081 CTELSIQMEK LCDNEISLRA EIERYRILLN GANVTTYTSN THGSGSGIAV GGVVGGSTRV 1141 ISQTTRTHSS SNTSYSNVPA SRGGYSISGN VGGISVGGTI GSHGASAHAT GGIIGSGVQA 1201 HRGSVSSLIT DKPRDRVHDE KGVDQSGRHF HSWYLGTISI NQVTPSYIEL KNICKIRRVD 1261 VGGFRIEQSV NGQVLGSAQI NVPLILDPQE VVRFNHRHGK YLGQFFMDVD AFDNSTVART 1321 SMYNYTEPHE ERAWFVYLD //