LOCUS VVC12339.1 545 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Non-specific serine/threonine protein
kinase protein.
ACCESSION BX284606-3607
PROTEIN_ID VVC12339.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="H40L08.3"
/locus_tag="CELE_H40L08.3"
/standard_name="H40L08.3b"
/note="Confirmed by transcript evidence"
/db_xref="WormBase:WBGene00010434"
intron_pos 33:0 (1/11)
intron_pos 103:0 (2/11)
intron_pos 125:1 (3/11)
intron_pos 165:0 (4/11)
intron_pos 209:0 (5/11)
intron_pos 261:0 (6/11)
intron_pos 317:0 (7/11)
intron_pos 356:0 (8/11)
intron_pos 410:0 (9/11)
intron_pos 455:0 (10/11)
intron_pos 494:0 (11/11)
BEGIN
1 MSTLAILYET GFIVFRTEDR SILMSEQIAG RKDTKQMLFS RDNKFLMFLT KSDNVFCVDL
61 SSKKILWSTD YKLHFFQSMG YSNTTLLLLN QKFIVSRIKH GKDLSNVNMH ASDIGFSITS
121 ELIEGNNNFV FITADCGEVL CSAASALDEP FVVKSKIKKL RITAIRAFDD EFLVGYENGS
181 VGVLKLTDKV PDEVQDIILC YFTGVINLKS LLRDINSERN LIKENTEKFL NLFTTRTNNE
241 LQQIKTEFDE TMKNYKERVK TFERDFNESE AIKQRTISNL KGLYEDESTH QKRKYETMIE
301 DQIRKSFRQL EEKQNEIKTI KDDAERKHRD MIGSFHITEK QFSIKAANNQ LEIENLKKTI
361 KELKFETLKK HEELGALRDE KEANTQKLKE NHREDVELLE AEIWALKATC VQLNEQRDHI
421 GDENAKVNSM LRIAKQQIEH TREENQRQEA EIQSLKELVQ KLRNKENEIT RTYTKVKKNY
481 SIQTKQYHEV LQQSHLWKRR MQDLEARIDQ LAGCVYDPRR LEHSVLNLLA KSQNVDLDKR
541 YKAPL
//