LOCUS VVC12338.1 1518 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Serine-rich adhesin for platelets protein.
ACCESSION BX284606-345
PROTEIN_ID VVC12338.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="H11E01.3"
/locus_tag="CELE_H11E01.3"
/standard_name="H11E01.3d"
/note="Confirmed by transcript evidence"
/db_xref="WormBase:WBGene00019188"
intron_pos 36:0 (1/11)
intron_pos 62:2 (2/11)
intron_pos 109:1 (3/11)
intron_pos 168:0 (4/11)
intron_pos 216:2 (5/11)
intron_pos 235:2 (6/11)
intron_pos 270:1 (7/11)
intron_pos 308:2 (8/11)
intron_pos 353:1 (9/11)
intron_pos 1439:0 (10/11)
intron_pos 1476:2 (11/11)
BEGIN
1 MADSLLDNYN PLYDIHLRQY FALPHMQKHL QKMGLLESTL NLNGEEVYAR HHAMMDMMLK
61 NREAQLMKMA ELRKKLDAAE KVECCRRIRT GQSPESYRQG KPSRSLSRNR AGQSGGGGRQ
121 RRYSNSFEDR DFVQRIEDRN TDPVEQNTKD PYKRLSANAK RFNYLHKLDD NTLIAYKDNL
181 KKQLQRLERF REISFGPHSV ARQPPPQQAS WFFRRRSLPS LTASAPGNTL KEPLRSVLNM
241 RGRKATTGNK LNASHDSRTS CPPTTRKRKD SNGRLPPINP HKNRVPTKPP APVSLQQITT
301 RLPPAAKKPA PSRGRPSNKR QTTTTTTTTI TSVSKSPQIS DTNTLPTLPS VTGRGIFTGA
361 AAAATAAAIG TAAINMDTLI DKEPEPSPPR TPVLETQKTF DRTSPTDGVQ VPDEVPPEIL
421 DKLADESEDV EEKLAEQEEQ EFIPRQIVLD NADPSHGDYE DSDSEPEYAE EDREPLAVQV
481 QLEHQVDVSP PTSNVTQDSP KEMSYQHSEP SPALPSPDAS VPSEHERFAR SPPTLVFTEQ
541 STEDAPESPN EVVHHVQTEA QQSPVIDVHS THVVEHFDTH DESPQSPVLS VHGGEEGYED
601 HHDEAPVLSV HTDHKAHSED VPQSPVQSVH SSHASEHIDE APQSPVPSVH SSHASEHIEQ
661 EALPSPVASE RDVPSAESPL VQSENFEHHA EVHSFHASEH IDEALPSPVQ SVHSSHDHHD
721 RSSPVASEPA ARSPSVQSSR TSEHFEHRGE VPQSPSSNQF HSSEHIEEAR QSPVTNQESV
781 HSPHASEHFE HREVVPHSPA ASQEEFGRSP SVHSPHVSEH FEHHEEAQHS PVASQEEAAR
841 SPSVHSSHAS EHFEHHEEAQ DSPVASQEKA ARSPSVHSSH ASEDSEHRQE IQHSPAASQN
901 EAARSPSVHS SHASEHIENH GESLQSPVAS MAGSEHHNMA ESSEYTTSEK EISPSIFSSH
961 TSEQFEQQSQ NSPVASERDN RSPTFESSVT MQAAAPLSPA ASDHAEQARE SPSFERAPSL
1021 HSQLSGNLEH DDENSAVVEA GQEPATQSPI PLEQEGRFER AASVNSYQAS ESFENQEATV
1081 VEHHAGALQS PVASEKEVSE AISQPAAEPA APSPISSEVE AHSEHHHTQE EIPIVQTSEH
1141 IDLTDVPRSP AFSMNDSHHE DQLSHEAAPH SPVAFTEPRV PSVHTSDTEE ESFEVQHHAG
1201 LTQEYAARKS PTEMDLYNPS RDNQESPVMS ETEAIPIVDR IDLEAYHNSP TKESTSPVTV
1261 NPVEVRVSAD EVAEHLASPH QNFEDEPSHL VDESEVPNNF ETVPEQEAYA PSQDAMMTSI
1321 YQPGSDTETR EWDEGEHHVK ESTTHSEHTD GNTHTSVQET ITTITDNGHD ADNISTDSLV
1381 IHEPAADNQM TQSIYQPHSD NDDDDDKVTE KEWDEGNKHV HEITEEHTDE SGKHFTETVT
1441 TTTTTVIKSG DDMKNNNDEE DGSDEERDKI IEEEGEHGSN GNLVRETITT TTHTVTSGGL
1501 PEGGILVDDG DETNISSL
//