LOCUS VVC12337.1 1499 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Serine-rich adhesin for platelets protein.
ACCESSION BX284606-344
PROTEIN_ID VVC12337.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="H11E01.3"
/locus_tag="CELE_H11E01.3"
/standard_name="H11E01.3c"
/note="Confirmed by transcript evidence"
/db_xref="WormBase:WBGene00019188"
intron_pos 36:0 (1/10)
intron_pos 62:2 (2/10)
intron_pos 109:1 (3/10)
intron_pos 168:0 (4/10)
intron_pos 216:2 (5/10)
intron_pos 251:1 (6/10)
intron_pos 289:2 (7/10)
intron_pos 334:1 (8/10)
intron_pos 1420:0 (9/10)
intron_pos 1457:2 (10/10)
BEGIN
1 MADSLLDNYN PLYDIHLRQY FALPHMQKHL QKMGLLESTL NLNGEEVYAR HHAMMDMMLK
61 NREAQLMKMA ELRKKLDAAE KVECCRRIRT GQSPESYRQG KPSRSLSRNR AGQSGGGGRQ
121 RRYSNSFEDR DFVQRIEDRN TDPVEQNTKD PYKRLSANAK RFNYLHKLDD NTLIAYKDNL
181 KKQLQRLERF REISFGPHSV ARQPPPQQAS WFFRRRSVLN MRGRKATTGN KLNASHDSRT
241 SCPPTTRKRK DSNGRLPPIN PHKNRVPTKP PAPVSLQQIT TRLPPAAKKP APSRGRPSNK
301 RQTTTTTTTT ITSVSKSPQI SDTNTLPTLP SVTGRGIFTG AAAAATAAAI GTAAINMDTL
361 IDKEPEPSPP RTPVLETQKT FDRTSPTDGV QVPDEVPPEI LDKLADESED VEEKLAEQEE
421 QEFIPRQIVL DNADPSHGDY EDSDSEPEYA EEDREPLAVQ VQLEHQVDVS PPTSNVTQDS
481 PKEMSYQHSE PSPALPSPDA SVPSEHERFA RSPPTLVFTE QSTEDAPESP NEVVHHVQTE
541 AQQSPVIDVH STHVVEHFDT HDESPQSPVL SVHGGEEGYE DHHDEAPVLS VHTDHKAHSE
601 DVPQSPVQSV HSSHASEHID EAPQSPVPSV HSSHASEHIE QEALPSPVAS ERDVPSAESP
661 LVQSENFEHH AEVHSFHASE HIDEALPSPV QSVHSSHDHH DRSSPVASEP AARSPSVQSS
721 RTSEHFEHRG EVPQSPSSNQ FHSSEHIEEA RQSPVTNQES VHSPHASEHF EHREVVPHSP
781 AASQEEFGRS PSVHSPHVSE HFEHHEEAQH SPVASQEEAA RSPSVHSSHA SEHFEHHEEA
841 QDSPVASQEK AARSPSVHSS HASEDSEHRQ EIQHSPAASQ NEAARSPSVH SSHASEHIEN
901 HGESLQSPVA SMAGSEHHNM AESSEYTTSE KEISPSIFSS HTSEQFEQQS QNSPVASERD
961 NRSPTFESSV TMQAAAPLSP AASDHAEQAR ESPSFERAPS LHSQLSGNLE HDDENSAVVE
1021 AGQEPATQSP IPLEQEGRFE RAASVNSYQA SESFENQEAT VVEHHAGALQ SPVASEKEVS
1081 EAISQPAAEP AAPSPISSEV EAHSEHHHTQ EEIPIVQTSE HIDLTDVPRS PAFSMNDSHH
1141 EDQLSHEAAP HSPVAFTEPR VPSVHTSDTE EESFEVQHHA GLTQEYAARK SPTEMDLYNP
1201 SRDNQESPVM SETEAIPIVD RIDLEAYHNS PTKESTSPVT VNPVEVRVSA DEVAEHLASP
1261 HQNFEDEPSH LVDESEVPNN FETVPEQEAY APSQDAMMTS IYQPGSDTET REWDEGEHHV
1321 KESTTHSEHT DGNTHTSVQE TITTITDNGH DADNISTDSL VIHEPAADNQ MTQSIYQPHS
1381 DNDDDDDKVT EKEWDEGNKH VHEITEEHTD ESGKHFTETV TTTTTTVIKS GDDMKNNNDE
1441 EDGSDEERDK IIEEEGEHGS NGNLVRETIT TTTHTVTSGG LPEGGILVDD GDETNISSL
//