LOCUS VTW47609.1 895 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Suppressor of Constitutive Dauer formation protein. ACCESSION BX284606-3024 PROTEIN_ID VTW47609.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="scd-1" /locus_tag="CELE_H20J18.1" /standard_name="H20J18.1g" /note="Confirmed by transcript evidence" /db_xref="UniProtKB/TrEMBL:A0A4V0INV4" /db_xref="WormBase:WBGene00004739" intron_pos 21:0 (1/9) intron_pos 328:2 (2/9) intron_pos 587:1 (3/9) intron_pos 616:0 (4/9) intron_pos 661:0 (5/9) intron_pos 748:2 (6/9) intron_pos 779:0 (7/9) intron_pos 834:1 (8/9) intron_pos 859:0 (9/9) BEGIN 1 MNVGNGINPV NHGITPAQMQ SLHSMGLNPA QLAMMMQLPN GVQLQQPQQS TANNPAAVSS 61 AQQIVNVQAM GHPPVPQPQQ HPLVQAQQAQ AQAHAQAQAQ AQAQVQAQAH QAQQAQAHAQ 121 AQAQAQAQAQ AQVQQQHQLQ AQAHAQQHLQ AAQQAQQAQQ AQQLQASQQQ ALQQLQAQQQ 181 AQQQAQQQAQ QQAQQQAQQQ AQQQGGQPQA SQVAVSSAQQ PQAQPQNSQT AQLLQQIQAM 241 QAAQAAQQAA QQAAAHQMQQ SQFVNAIANP PCPPPPPGIP SMPWPISTPV CHVPYFDVNM 301 YRSVNIEAMP SHDASGMDLP LIDITTLRFF FNLGVQQSRN LIAARQHQQV QHQSQNQPGQ 361 PPAQQPATSI QESLSAPPGA SPNLIALVNQ PNGGQVPNQN TIEQLNALIG QQHILRQAQQ 421 LQGPQGQAQN QMQQQLIQQQ LNQILARNQQ QQQQQMQQQL QQQASNNALQ QQLQQLVEQQ 481 RQQQQQQQQS VQNAQIAAAA TAAASTSTPN SQDRKIPHTE LVNASGQSIV GLSSTPGFQV 541 STPGLTQSAT TPIPTSITPN AQQQFQKHFE GQTMLLQHAL LQHANNSMAQ QQQQVAASGV 601 GQGQTTLHPF IRPNDTTRQA QLVNGVGDQT VSPRPIPLDP SPPRATSGGS TAASTASWAK 661 EPIINVEDDK PSTSSGPSTT TASHPVNPIG IANPLSAASA AAGFHTTKTS TAVSGNGNPG 721 SNVATPVLSI IQMSEDHFTD TFRKSDQKMH QGQAGNINGQ AVRSPKSDGN DSDERPPAVD 781 FAARPIDPIF KDAREDMKAK DVRTLEHAVK RPFSNNMATH AKNVKESPSP QRHPGQSPHQ 841 IPSPMRQGAH NPLGINRSIP DAAPPKIEAD SSRSPSEDLE EDGGGKRLRI ATDEE //