LOCUS VTW47600.1 1151 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans BAI1-associated protein 3 protein.
ACCESSION BX284606-556
PROTEIN_ID VTW47600.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="F54G2.1"
/locus_tag="CELE_F54G2.1"
/standard_name="F54G2.1f"
/note="Confirmed by transcript evidence"
/db_xref="UniProtKB/TrEMBL:A0A4V0INL2"
/db_xref="WormBase:WBGene00018837"
intron_pos 17:2 (1/20)
intron_pos 60:0 (2/20)
intron_pos 112:0 (3/20)
intron_pos 134:1 (4/20)
intron_pos 174:0 (5/20)
intron_pos 245:2 (6/20)
intron_pos 405:2 (7/20)
intron_pos 635:2 (8/20)
intron_pos 676:0 (9/20)
intron_pos 699:0 (10/20)
intron_pos 761:0 (11/20)
intron_pos 799:0 (12/20)
intron_pos 864:0 (13/20)
intron_pos 944:0 (14/20)
intron_pos 972:0 (15/20)
intron_pos 980:0 (16/20)
intron_pos 1007:1 (17/20)
intron_pos 1061:2 (18/20)
intron_pos 1099:0 (19/20)
intron_pos 1124:1 (20/20)
BEGIN
1 MMKPRRTRSA KLRRRQQVQA SDGNFFEKVT APSDGDTARD DELYTIKNLS IVGDKKQIEA
61 LYVEALYTIT HKLGQGDVEE SQESLYKYVR NAFQGDAAVH NALMEKAKQN KPPSVLLNIL
121 LLEAKDLIAK DVNGFSDPFA MMGVVPGTRK ENQPMTDSAH PEKEEQEAKS PRALHGKKDG
181 LMHRFGGSFR RKVGKKGKPQ DTGTIPAKLI KASSVQKKTL NPKWSEKFQF TVEDVQRDQF
241 HIDIWDHDDE EQSVLDAVSS LNQITGGFKG IGRYFKEVTQ SARANSDDCT DDFLGCINMK
301 LAEIPPDGLE QWFTLQPRSD KSKVSGQVKL KIWLSTKEEG RAGDEDETLD VKEHIELLRQ
361 FALYEIRQTG QPVRFWDGVY PERAMIILRQ HAIQGDLTDV HLAMCRWLAF HSMIHIDISF
421 SLLYKTLQKI IDKWQPLTLD KEEEDMLTDS FSSFDSYCKR MMIEHREKFT PSKRNSGEEF
481 SSLIKCMRAL RESPFYQKYL PYKRPFHAHL ESLVVKSAED FIDRSIESVQ DPDPCKELLQ
541 LLNIVNTQCS RFLHYAAVIR EVARIDYSQL TLNTFDRLLT EYLTSELMSE KKMDLKSQMR
601 LSAAQDPPNE DDLIDLMRIH MAFVELRNYR LANRVRVRDE SEWYAIFNKG IKKFLEVAKE
661 KALARVHLSC QLDMPISTSS NDMRHSSSHI DICHIIEQFT VFWERVDIND AGLKIEYTRQ
721 LVDVICEIVT VYTQKIISGL EAEGFTQELQ AFIPSQLLHL LCAAINNCEQ VRRSLNITEK
781 LHMDDMSLAY ERDASRLNGN HMWKSEIENR LESCESNICS EIDRIVGLLT ERRLPQMKKH
841 VFHLAWSPSA QLVEDSLKPL TDMLDIELSS VHKNLLHRNF LRVMSAQVSI VVKLLRECVT
901 ENVGMEPAFY HRLFEAWHVL VEFFHAGGKG LSMDALDTNP EHMKLVKILS LNQTPTEQLI
961 EKYYKDLLKQ QALADHQFGN EVSECKYGIL NVRAYYNGNA QTLVLDIIGA KQIIALDSNG
1021 LSDPFVVIEI IPKFRYPAVP VVKTKVVSKS LNPIFDETFE FHIPPNPPST AMLHFTVMDH
1081 DYLRSNDFAG EAFLELNDVP GFGATGGSTL RQFNLILIQP VSNTKDVLDV LNSRKEDKDA
1141 VEFLRSISTV Y
//