LOCUS VTW47597.1 3014 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans RAVE complex protein Rav1 C-terminal
domain-containing protein protein.
ACCESSION BX284606-3513
PROTEIN_ID VTW47597.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="rbc-1"
/locus_tag="CELE_F54E4.1"
/standard_name="F54E4.1f"
/note="Confirmed by transcript evidence"
/db_xref="GOA:A0A4V0IKG1"
/db_xref="UniProtKB/TrEMBL:A0A4V0IKG1"
/db_xref="WormBase:WBGene00004313"
intron_pos 30:0 (1/31)
intron_pos 98:0 (2/31)
intron_pos 163:0 (3/31)
intron_pos 316:2 (4/31)
intron_pos 414:1 (5/31)
intron_pos 458:0 (6/31)
intron_pos 619:0 (7/31)
intron_pos 747:2 (8/31)
intron_pos 855:2 (9/31)
intron_pos 875:1 (10/31)
intron_pos 1054:2 (11/31)
intron_pos 1088:1 (12/31)
intron_pos 1118:1 (13/31)
intron_pos 1152:0 (14/31)
intron_pos 1252:2 (15/31)
intron_pos 1297:2 (16/31)
intron_pos 1439:0 (17/31)
intron_pos 1544:1 (18/31)
intron_pos 1661:0 (19/31)
intron_pos 1784:2 (20/31)
intron_pos 2061:0 (21/31)
intron_pos 2177:1 (22/31)
intron_pos 2235:0 (23/31)
intron_pos 2371:1 (24/31)
intron_pos 2509:1 (25/31)
intron_pos 2564:2 (26/31)
intron_pos 2616:0 (27/31)
intron_pos 2696:0 (28/31)
intron_pos 2729:0 (29/31)
intron_pos 2819:0 (30/31)
intron_pos 2971:1 (31/31)
BEGIN
1 MNAHQVITGA LNNGENVYAL GNIEGLTFTA CAVGSDVVIL DSDFNRVQII PESKNHLLVS
61 SLSCCQETGK IAVTYGNLVK ILEATNSGAD KSTLKSSIFQ FTWVETYSFT HKEPISSVQW
121 SMEGLRLLFV IGNKLVLHQH RSVSSTSRSS TSTPVTFCIS DDDLQERHTW EIIWTTSLPY
181 KPKYIRYSPD GYYLALSGDR DCFIKIFYQN GTEHTEPEFI AITLNHPAPV CGFEWRKTGR
241 YMPRKCISPI LMSWCEDRTS RIWKETPAPE TSIIDLTGEG GGDPLWDRQK QKKFLGKYIR
301 VKKTKTKILN KLRKMMPEKH QETDSNPIGI RAQIGKSPSL LDIPTSKDNT DHQETSFYLA
361 ATINAETDCL LVPSFNDHNN QKPFSVHWLN NKELVFSVGA EKLLAEAVLL DLDAVTHSND
421 EPEDSSPTES EKKRDFEHEN VRSEHSDATR TGGSVSSDAP SSKDILDVKL EILLRQWTKS
481 NDVLFSIHPV DGSLLTWTVE WLDDHFRQPV ISYSSRLPGA LPSSDSMSLH SKLNTFNPHE
541 PIYLDALRND MENKDTSVLF HDKLLERRVS NTIHVLTSHD NGTLNLWHMS VDDQSSFSHV
601 VSMTHISRMC GHRFQMQQII AHPVLPLLLT TSKFKSTKLK VDSTMDVLSE VILWKITPVG
661 PLCKNGGVKE LARVASPSIN GFSTVGWVPA ILPSCTLGTV CNSPSSCFIS CDGNQMIIYQ
721 AVLDARGLLS ELSNAQTAFN SRTPVDNYSY SDKILRTPSP RSDRAPSFLK QFNVVSTQST
781 AKPGCVLEVG KIEDVNLNDL NLMFLHVFQS RIVMADDDDS SESNPMSSVI DRSRSPTFRD
841 KFFIVIVDQK ENEDVIMMFS LTISSQPPQS IPTFDTEALP GEKGFLRPSS PLAPSMAKLN
901 FEAELVCRQV MPLPEGTRIT NMAPAAGHLS SSSLYPACET PYVLVSSDND DSVRFWRCAK
961 ATDPVSPNKF EWREWNMISD NHPSELGVEG SIVKVNAAHS GRIACAYQKP NTTTDNNIII
1021 EVAVFECESS GGVEWFREDS FRIQQNHFFE FSKPHFTGSQ SKRHSGDQEH LHLLQQRTEV
1081 LRSSFRRGIN AGKPTKPSYE LIRAMENASS SVTDIAQMKL ENMVRLDWVS TEDGTHMLTV
1141 GMGTKVYIYA QIGQDPAQQN VTLMRESETS MRRPSIRKAS SLLPNIQPDS RFTSWVCCRV
1201 LNLDTADGLP PIPTALSWVR DGILIVGMQS EMRVYNQWNF KTVQEKTKSS NPAANPNIVS
1261 LTVSTSHSML DQLTRKKEAL VSSRSRVFLE FVSTMNKAHP KENESQMVLN ILKSEGVFET
1321 ARMCSPILPQ YHPKQLIVLL NAGKKRRVKA ILNHVLSSLK QKKGAAHNPL SRAASIKRMS
1381 TVDREDSTNA TPADARIDDD SMDYDEIDDI PLLPLYALMK VDFDSDVVVE KSEELMAKNT
1441 DEYDDLFDDG LDKDGDIDAI LRDNESMYSG RSRHMSGGSD MGRNENQVSA IFTAKDYRKL
1501 TELLTHTHLP GLSSVDQMHL LAIADTLSHF ASDAKDKVEQ ANAAMKPVVQ SVLGDNTAGG
1561 YATAAAGVET VDECGLRYLM AMKQHEYLMV CLPMKQRMEL KKSGLSASNI IWAQHSETET
1621 ELLNAVPGMH RTNPSWEELK GLGVAWWLKN TASLKICIEK IAKAAFQQNQ DPMDASLFYL
1681 ALRKKNVLTH LFKTIRNTTM ADFFMNDFTK EHWQKVAAKN AFVLMSKQRF QHAAAFFLLS
1741 GSLKDAVQTL CSKCNDVQLA LVVVRMYESD PEAQQAMINE VLCREVLGIT YEEFETQRGC
1801 CDDDAPVSAH ASKEPFERSM AFWILKDYTR AAHTLVQEAQ SDRLLSSLSD IFNFYSYLRK
1861 HPLVVRQRLN NVGAQVGTTE KLLALGRQLE SILTPPERRL FFRTSAEHMA RGCPMLSLDV
1921 LNTLPKRISI VQDYDEALKL LFGDNQNQAA PPPPPQMSID VDWSKPTTSD EPDELKLDWS
1981 DEEKDDEEIE EVTNENTVDA PVIQNGAGIE NAATLQSQLV GATDIFAQHM KFVASLRILT
2041 EELSTLASGF DVDGGQLRNQ LLNWLEREVE VLQTTCDYNV ERKSDEANED NHDSDYWSST
2101 GPNYDQPSDL SKLSRASPSL TPKRITWLKA NQKLLRSFTS FCTLHSAHNH RLASVLMELL
2161 LLLLNVQRDG DDDIVSKQLM ATGVNTFPLL DAAVSTPKMF VSSPLAYIEN QGSDLLAAIS
2221 ELSDVPNMAG DLQKCYMLYN LCQGFSCCIY LSLTDIDQIY SSMLNLAPKP APIGGSENHV
2281 VTPPVKWPGV EALVALLGRE KEDDAPQLRL LIIESFLAIS MSLFCFALSA YDSRWLFRLS
2341 AHEIDPSKFG LIFGGGGESK KASHPPARPP RPAAPVVQKE STSENNGDNL RSRLNLRILG
2401 NEKLSTASKD SLPSEALHSK WVPPQKNIVQ LFAEKPSVMM HEDDDDAYES DEEDKGNSYS
2461 DDEEDEDTLS CENAAPASFA WQLLRLALIQ QQLHRVKQFL ILVGFDPRDI PTVAPRIDSI
2521 LQQLNSWISL QHQTLKNFPG GIPNDVLPDM TIDMSDQHLA ASMKKYAVLV KKNNTPFESE
2581 DRKIQSIQRL WTFLVREDHL QEIFIKYIFS QHSMMESAPE PIDMIVGIDN NPHLPEAFKI
2641 VQKDSEPIVA FGCNQESPGL IVVSNGRELQ EMDMSNVFKD QYDQTSWMWN RADLDMKNIH
2701 SKRDALRDND DYQIFTDTNS QNVKHTNVMI KRHIPGVRRI DSHPHAPFYV TGSSDGSIKV
2761 WKWGAKDTVY TARVAGQHAK VSKIAFSCNG NKFAAVDGDG MLCLWQASQA TEQKKPFFSQ
2821 RCHNKSATDV RFLGHSASVL LTAGSSSLDY NLGLWDTLLP TNRALVHSWV AHPEGATCAL
2881 YVPNQQTIFS GGRHGEICLW DIRQRQLRHT IKAFDQMHVV KTLATDSAQD LIVSGSSEGD
2941 IKIWSADAIP QLMYSLPGEH TAKGGFSFRQ VGQSTVQGVQ QLFIDQNMRL FSCGADASLK
3001 FRTLPSIFNM TSLL
//