LOCUS VTW47580.1 2111 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans EGF-like domain-containing protein protein.
ACCESSION BX284606-1750
PROTEIN_ID VTW47580.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="chts-1"
/locus_tag="CELE_F48E3.8"
/standard_name="F48E3.8f"
/note="Partially confirmed by transcript evidence"
/db_xref="UniProtKB/TrEMBL:A0A4V0INH8"
/db_xref="WormBase:WBGene00018607"
intron_pos 12:1 (1/34)
intron_pos 91:1 (2/34)
intron_pos 114:1 (3/34)
intron_pos 140:2 (4/34)
intron_pos 178:1 (5/34)
intron_pos 240:1 (6/34)
intron_pos 299:1 (7/34)
intron_pos 354:1 (8/34)
intron_pos 398:1 (9/34)
intron_pos 439:1 (10/34)
intron_pos 482:1 (11/34)
intron_pos 606:0 (12/34)
intron_pos 656:1 (13/34)
intron_pos 740:1 (14/34)
intron_pos 823:1 (15/34)
intron_pos 878:1 (16/34)
intron_pos 981:1 (17/34)
intron_pos 1113:1 (18/34)
intron_pos 1156:1 (19/34)
intron_pos 1196:1 (20/34)
intron_pos 1238:1 (21/34)
intron_pos 1300:1 (22/34)
intron_pos 1408:1 (23/34)
intron_pos 1436:1 (24/34)
intron_pos 1546:0 (25/34)
intron_pos 1638:0 (26/34)
intron_pos 1684:0 (27/34)
intron_pos 1727:1 (28/34)
intron_pos 1790:1 (29/34)
intron_pos 1836:1 (30/34)
intron_pos 1927:2 (31/34)
intron_pos 1985:0 (32/34)
intron_pos 2033:1 (33/34)
intron_pos 2077:1 (34/34)
BEGIN
1 MRLLFLVFIL AEIMLQNEIM ADHRTINQSF RGNFFRRRNY DGPRAYQIAP DLTCSYDNQC
61 AGYPLAICHS VCQCVKGALN TGTTCIASST AIQTSVACPA GQTYIREAGV CMTVQQPGEP
121 CQYSQQCSAL EPGAYCLKMR CECVYGMKKS SNGCTFVNND CKERGHIFIS EIGECREVFP
181 PGGKGCSHNL QCSGAYPDAT CFMQTCTCPP NLPVAADGTC GRSCPNNQVY SGVTGECLPE
241 KQPGQDCIYS SQCQASFGGL VCDKNTCRCP NGLVFDGLKC SHGCPPHKRV IDKEICVEGC
301 PSGIVEVAGR CVKQVSIGQP CVANAQCNFG SFCQSGTCQC PPGFYVQDEQ CQAIESEPNE
361 SCQNNEKCTK GSVCYNGKCS CPRNHELING HCQQNRAAAH AYNTALENIR KIRLRFASQS
421 KSRNSSPQLT DVENDNDTVP IGSACVRIGV TCDGGSVCVA GICVCPLGKT PRNGVCIEHV
481 AARPGTSCQN EEECVDHSYC SPETNKCECM KASQMVIGGE CRERLKAHPG YGCTMGEMCV
541 GNSVCVNGKC ACVDGKVEIN KICIDQVSAK PGDTCGKGII CEGGSYCNTD SGKCACRRGE
601 NSINGICKGF TFVYPGDLCT DITSRCTGGS YCARGRCECP PRMSAIDKKC VHQQTAAPGE
661 PCSEKVACSP FSVCENNVCK CVNNMMIRDK MCVQRRKVNI GNSCNNEDQC LGNSTCMDNN
721 CQCGIGFVAS MDVCVLRKTV TPGYLCNPED ICTGQSVCIK GVCQCQPDYK QMHNICVKKN
781 IGIEGSPCSS RDDCGEGLMC GASGKCSCPE GLFSVNGKCR SYVQLGQTCT SDDRCAERNA
841 QCQENYCTCR TGYTNINGQC AANIVTPAEP ETLSQVKSGL LGHICTSNDH CKIAHSQCRR
901 NVCQCIDGYR IFGSTQCIPR PGKPKERKTE KESKLVELGD KCDKLSLCSK GAICEKGVCS
961 CPETFFESDG ACVKNVAKIK VVVPPLSSCL GGEECSGNSE CVHGICFCKE EFTLFEGKCQ
1021 RLRIIEKLTV LESKKLIKPI KAHTTPTAAS NTTPIPVKTT TTLQTTTATT LPENYVSSST
1081 NRPLTPIIIS MKLGSTSSPS PQITSNPEYK WRLSKPGHMC DNKTHCTNCS VCVNGFCRCP
1141 EGLVHYGDKC VSEIDATKCL ASNQCPSGAQ CVKGECRCKP GLGITRYGFC VPITFAEPGT
1201 SCAYGEHCQK DSHCEDGLCT CNEPLVLKEN KCVVSPREKR FISDVHRKLL RFTPKKLAKL
1261 GEYCFRNSHC ESQRQCLKNV CKCASNFVQS SFSCVPRMSV ISSLALPGES CRKGFCVGGS
1321 TCENFMCKCP DDYFKKGDSC VRYESRIGAA CGTASGCSGG ATCTSSFCQC QDQYDADVDE
1381 CYPYEPSVRS RNVKAISGRR KVNRVVSAST INCPIGYDLV NGMCVNSETL SVIQLAAPGG
1441 ACEDGTILCT GNSVCANNVC ICPGGETVQN GTCVSINTYS SPGDPCDLTN TICTGNSQCI
1501 DGICKCPNNQ GAINGRCSNM GNANCGNIQC GTNQICIQDS CQCRPGYYQQ PGSCLQDRCN
1561 CIQEVESDSC LNRQCGMNQV CIQDQCQCRS GYLVLQETCI SDRCNCVQPS VDAISGGCMN
1621 QCGNNQVCIQ DQCLCRNGYY AQPETCTGDR CNCVQHVVPD MGNCQRQCGN NQVCIQDQCQ
1681 CRNGYYAQTE TCVADKCNCV QRAVAIPSPC VGNGCAPSAQ SQSYLQFIGL PGKMCDLRPN
1741 AIPCRNDAQC VNNYCICPSN RVISGSNCVF YLGDALPGQS CQNNGMICRG GSSCNQNICQ
1801 CAVGFSVDNG RCTPTIEVRF TMLPVTTAIP VFIIELNPGQ TCDPSCAYQP CMQRCSGGSS
1861 CSNSICSCPQ GSGVLNNVCS PSFPQNDNYN LTRTARPGDS CDNTIVCIGG SSCLIGTCLC
1921 DSGYEPSSDR SSCVLNDRYN VRSRSYPKTF CTFDSECTGG SICIDKRCAC RNDHEMINGV
1981 CQLANLPGSR CHTSFCSKGA ECRNGYCVCA KTNYSDSTLD CVSSINANQG SMAYPGSKCN
2041 ATTSCQQNSS CFFGYCVTPQ DEIDREANIK IRHIEKKKCG SYKDCGKSQT CSSDRLCECT
2101 FNTNLVNGEC V
//