LOCUS VTW47579.1 1283 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans EGF-like domain-containing protein protein.
ACCESSION BX284606-1748
PROTEIN_ID VTW47579.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="chts-1"
/locus_tag="CELE_F48E3.8"
/standard_name="F48E3.8e"
/note="Partially confirmed by transcript evidence"
/db_xref="UniProtKB/TrEMBL:A0A4V0INQ1"
/db_xref="WormBase:WBGene00018607"
intron_pos 12:1 (1/21)
intron_pos 91:1 (2/21)
intron_pos 114:1 (3/21)
intron_pos 140:2 (4/21)
intron_pos 178:1 (5/21)
intron_pos 240:1 (6/21)
intron_pos 299:1 (7/21)
intron_pos 354:1 (8/21)
intron_pos 398:1 (9/21)
intron_pos 441:1 (10/21)
intron_pos 565:0 (11/21)
intron_pos 615:1 (12/21)
intron_pos 699:1 (13/21)
intron_pos 782:1 (14/21)
intron_pos 837:1 (15/21)
intron_pos 877:1 (16/21)
intron_pos 919:1 (17/21)
intron_pos 948:2 (18/21)
intron_pos 1076:1 (19/21)
intron_pos 1204:0 (20/21)
intron_pos 1252:0 (21/21)
BEGIN
1 MRLLFLVFIL AEIMLQNEIM ADHRTINQSF RGNFFRRRNY DGPRAYQIAP DLTCSYDNQC
61 AGYPLAICHS VCQCVKGALN TGTTCIASST AIQTSVACPA GQTYIREAGV CMTVQQPGEP
121 CQYSQQCSAL EPGAYCLKMR CECVYGMKKS SNGCTFVNND CKERGHIFIS EIGECREVFP
181 PGGKGCSHNL QCSGAYPDAT CFMQTCTCPP NLPVAADGTC GRSCPNNQVY SGVTGECLPE
241 KQPGQDCIYS SQCQASFGGL VCDKNTCRCP NGLVFDGLKC SHGCPPHKRV IDKEICVEGC
301 PSGIVEVAGR CVKQVSIGQP CVANAQCNFG SFCQSGTCQC PPGFYVQDEQ CQAIESEPNE
361 SCQNNEKCTK GSVCYNGKCS CPRNHELING HCQQNRAVPI GSACVRIGVT CDGGSVCVAG
421 ICVCPLGKTP RNGVCIEHVA ARPGTSCQNE EECVDHSYCS PETNKCECMK ASQMVIGGEC
481 RERLKAHPGY GCTMGEMCVG NSVCVNGKCA CVDGKVEINK ICIDQVSAKP GDTCGKGIIC
541 EGGSYCNTDS GKCACRRGEN SINGICKGFT FVYPGDLCTD ITSRCTGGSY CARGRCECPP
601 RMSAIDKKCV HQQTAAPGEP CSEKVACSPF SVCENNVCKC VNNMMIRDKM CVQRRKVNIG
661 NSCNNEDQCL GNSTCMDNNC QCGIGFVASM DVCVLRKTVT PGYLCNPEDI CTGQSVCIKG
721 VCQCQPDYKQ MHNICVKKNI GIEGSPCSSR DDCGEGLMCG ASGKCSCPEG LFSVNGKCRS
781 YVQLGQTCTS DDRCAERNAQ CQENYCTCRT GYTNINGQCA ANIVTPAEPE TLSQVKSTKC
841 LASNQCPSGA QCVKGECRCK PGLGITRYGF CVPITFAEPG TSCAYGEHCQ KDSHCEDGLC
901 TCNEPLVLKE NKCVVSPREQ TRRRQPSRLL TECPRDGSCR LPSCFCTSTG KIPPNNFDTK
961 QVPQMVMLSF DDPITDRIIN TLKSLFSGSI RNPNGCAIKG TFFVSHQWNN YDQSLWLHST
1021 NHEIGVNSIT REDLSGRTQE RWYKEQKGMR ETLAEFSFID RSHIIGTRAP ELKIGGDAQY
1081 RMMSENNFTF DNSMLVSSPY WPQTLDHKLA WECDGNCPTQ SHKAIWEIPI QNIQANDTRW
1141 YKTLTRAMKP FDSRDSVTKM LQRNFMNHYK TNRAPFILTL DTEFLTYLPD NGAVYALRDF
1201 LKFIVQKQDV FVVTGSQIID YMRNPVDLNN IKSLRSWQCK PQMKDEANPC ENPTTCSFSG
1261 RARGQFAHSF RMCGVCPKSY PWI
//