LOCUS VTW47566.1 397 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans USP domain-containing protein protein. ACCESSION BX284606-3970 PROTEIN_ID VTW47566.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="F35B3.3" /locus_tag="CELE_F35B3.3" /standard_name="F35B3.3a" /note="Partially confirmed by transcript evidence" /db_xref="UniProtKB/TrEMBL:A0A4V0IKF7" /db_xref="WormBase:WBGene00018030" intron_pos 17:2 (1/9) intron_pos 55:0 (2/9) intron_pos 72:2 (3/9) intron_pos 111:0 (4/9) intron_pos 146:0 (5/9) intron_pos 200:2 (6/9) intron_pos 235:0 (7/9) intron_pos 272:0 (8/9) intron_pos 358:0 (9/9) BEGIN 1 MPPSGFYTGY LEKKHKCNWK CYLPNNNCKL RQIKPVPNLT RLLEESRLTN SLSRLRDVFK 61 KKSSPCETDV NSNAEHIGGE SIWGKIQRMS VSNCQNRMKG GRDGTRDVDK PIYNSCLECF 121 AISVCQALLA CPPFVRYVKE KIAETKLDMH MKSLVAQFAA HSIPAAGSGD WPRVSISKLL 181 NSIPGGFNGK CREDAEDWYR QLSKEFYDET FGQVSAYYKT VCHECGKCRE INDKSPRVQL 241 RCPDLEITAA NIESMLAVTG NEIVTWEHDG CENTTCRETT RYEFPDVILV SVDTFQDGNR 301 HIGKELEFFP TEDFSPISVN NDEPDIFHLG GVIYFRTFNC FRDESSGHYM ARVYHHGNVF 361 LADDNRIYEQ NINRPTEPAN SVPYFAFYYR QRRAGRF //