LOCUS VTW47556.1 1573 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Protein transport protein sec16 protein.
ACCESSION BX284606-1930
PROTEIN_ID VTW47556.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="sec-16A.2"
/locus_tag="CELE_F13B9.1"
/standard_name="F13B9.1e"
/note="Confirmed by transcript evidence"
/db_xref="GOA:A0A4V0IKE4"
/db_xref="UniProtKB/TrEMBL:A0A4V0IKE4"
/db_xref="WormBase:WBGene00017419"
intron_pos 79:1 (1/13)
intron_pos 131:0 (2/13)
intron_pos 262:0 (3/13)
intron_pos 330:0 (4/13)
intron_pos 389:2 (5/13)
intron_pos 751:0 (6/13)
intron_pos 786:2 (7/13)
intron_pos 921:0 (8/13)
intron_pos 1030:0 (9/13)
intron_pos 1099:2 (10/13)
intron_pos 1182:2 (11/13)
intron_pos 1279:2 (12/13)
intron_pos 1504:1 (13/13)
BEGIN
1 MSFYWQQGLP NQQDTGQQSQ QPAQQGQWDF INLGGAPAPQ HQWNPATQQQ NNYYYHQQPA
61 APPQQHTNPQ QPPQQQYNVP TNSHQTAEQN YQQQWAQQQY QNQAQPQPPQ QPSLSSQQIQ
121 HQPQLPKAKK APKVQTNTQQ QVQQNFNPTP PVLTTSQKPG NTQQDYYYSQ QQHTQQNVYQ
181 TNHVHPEETQ VVAQALQPTA ESTYFPPPPV QQVGSAPPSK EVTPERHFTA AAPAPHVEQV
241 ALVPTPPTLA PKSQAPNTAK KNKRQKAVPS TAVSEKPEES RESSSLGGSW SQQDTEPSER
301 SSVEPEILEH PVKSESDKEE KTPRVSMSEF PNHETTPTIV TMSVSTNEDR QKTPEAGNLS
361 QNTSIVLNTT DSPLEAIATS TPKEIKPEKR SSVSSQGTIG AEKTKAKKKN KDEAVSSMFK
421 RPDQFSENGE ASGNNSDSTM ASGRPDFERG HARASYREYK KTYKEIIDRL KMMRTDSHRP
481 DFRPASKLAN PLLAAAGLSR LHPAIRRESA GGRNDGRTSV PLHHSHSFTE HMYHDQNGGR
541 RSRVSRLDPN ARPSSRQATG YQTANQSYNH YDQHNHSYQH QQMQHRGRHS ALGVPFDARR
601 TPSSYIRTFS GEYGQEPQET SSISENEDDG DNVESDDELR GFNMERQHER RGYNNAQYQE
661 VQCPIEEDGS ALYYCGVVHV NMDIWRRITQ SYQIPAEFNE LKPIEKAAYI FYAVIHKQPC
721 RNLDTFRKQF NFYFYKYGME GDSDDDALFK VCRTMQNHYI ERQREKERAN QNMMSTLFSD
781 DTSIDGQSDM NSVCEESLNA YDIYNNGPLK FTCPHSFMNI STGGQIISIR PDQSISAVVF
841 DDIKSVLKDV PTLQVKDAAM TFKGPLIPHQ SAPHTVRLYI TKQIENIKNS AVAIENPEAN
901 DVVESLLIWQ LLETMVKQQG NITGPDIAEL LAKVASQPVQ IEAPPQQANI APALTQFTKF
961 LLGGHIDEAV ESALRNGLFA DALVLTRRLF PNDERRIEQI ESRFLQTRSM SNPVTTLVSV
1021 AKGESPPVLT NPPLDDHLSW GTHAAIILAN LDQRGPAMNT IYQLGRALAK RDYHSAADFC
1081 FLVCGVLGGT NPFEPIATPE GEEDYRRHIS LVNSDIPDNE SNPKCQYGFL LTDLHATEIF
1141 DYALRLKADR ESPLTKSVEY QTARIKYAKL LANHGFNTDA YRYCTEVARA IWNNLYLFKA
1201 DDLLELCDLA ESLQYAASVN PSESQWIHDL RTTVQAGFVY TPQPTQTVKH LENKPVPSVH
1261 QGYDLQSNAQ DDPEVPREPV QHVPITQNVI DPVPTHSAFT PTIQPKDPEL SHPPQNQVYR
1321 EEPPHIPPTP TPSVHQEQHY QQFDQSFSQS LTQQAQEDGF MTPPDYSDGP LTMASSPPTL
1381 PPVQSVPVSS KPAPPSAENQ AQNSTSPQQP TQEQGQETQD RNPDQGGWLK SIQSTVQNTV
1441 QKATGRNPMN LPEDRNPSIV WDSTQNKYVG AGVEQEPVAP PPPMAQAGPA PPVGGGGLRA
1501 ARGVMISASR YARVGGTSSS ASQAPAGMMA PAPPTANFGF IPAPVDNDND SVDPFSGQAN
1561 PTIMQSAPMS SDE
//