LOCUS VTW47546.1 1706 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans EGF-like domain-containing protein protein.
ACCESSION BX284606-1242
PROTEIN_ID VTW47546.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="lgx-1"
/locus_tag="CELE_C54G7.3"
/standard_name="C54G7.3e"
/note="Confirmed by transcript evidence"
/db_xref="UniProtKB/TrEMBL:A0A4V0IKC9"
/db_xref="WormBase:WBGene00002983"
intron_pos 16:1 (1/29)
intron_pos 53:2 (2/29)
intron_pos 92:1 (3/29)
intron_pos 161:0 (4/29)
intron_pos 295:1 (5/29)
intron_pos 346:1 (6/29)
intron_pos 392:1 (7/29)
intron_pos 428:0 (8/29)
intron_pos 531:1 (9/29)
intron_pos 575:1 (10/29)
intron_pos 602:1 (11/29)
intron_pos 631:0 (12/29)
intron_pos 679:1 (13/29)
intron_pos 830:1 (14/29)
intron_pos 860:0 (15/29)
intron_pos 900:2 (16/29)
intron_pos 1003:1 (17/29)
intron_pos 1040:1 (18/29)
intron_pos 1092:0 (19/29)
intron_pos 1119:1 (20/29)
intron_pos 1208:1 (21/29)
intron_pos 1257:1 (22/29)
intron_pos 1302:1 (23/29)
intron_pos 1348:1 (24/29)
intron_pos 1390:2 (25/29)
intron_pos 1429:2 (26/29)
intron_pos 1481:0 (27/29)
intron_pos 1569:0 (28/29)
intron_pos 1645:0 (29/29)
BEGIN
1 MRVLLAISVI YHITIAQQVG INVPCNKELD GLLTADPDGD ERAFMSCQGV GVGTIGFWER
61 KLCPNNMVFD FINQHCKEQK KKARKQQNLS IAILNNSCAN GETCIGGSVC DLDTLRCMCP
121 YGTTPKLDTL SCESSQPPFV SATVDGPAQF FNSFSGGNGN RNNQNNGFMP FGQPSELPDF
181 QPNNNFKYGN NFGQNQNSNN NNNDFNWNPN FNWNNNQNNN NNNAPNKQAP MNNAGVGATT
241 TPDFNPFQPN PNQQFVFNFN KNQGGQNNQN NHVNNNNHNQ NIPVLESKPK VATLAIPGAS
301 CKSNEICVGG SICTLPIGIC LCPGDLEARE GECVLPAAST ISVQKVGIGA LCSDLAECDH
361 GSTCVMGRCT CVSPLVQHEG KCVLRQQQKI VVQVMTPPPT LPPVQVPIQT LPPQTRPPQL
421 PPVQITQPPI QTPVQPIFFQ TTRPPMPTYA TTPATTQFIP KQIYTTPPQM PKNSIKINQM
481 KIGGSKQAGV GVRCSLNTDC MIGAYCNGNT NPPSCQCLST HVNIEGRCEK VIYPGQVGCR
541 SDLQCHAAHS GTHCIDRICV CPEGQRAVDQ TCVSASEPVT SPPGGSCSNL RECTGGSVCR
601 EGWCICPDPS MIVNRGICIQ SGPKPTLPPR TPIPQVPLPP QLPISVHVPQ VTITKAQPFI
661 TEAPLAPQGK KIVPGGRCGP IDVCVGGSNC IEGFCLCPAG QQPSNSGRCE KFTTTSRQTT
721 LPSTTTTQGT TTTTTAPPPT TSVFSFTIAD LLSTRRQPAF IEIPTHVPLT TTAIQTDDEC
781 TAIGLICKGN TVCRNKSCQC PETYVLHHDG CVSPEEAARR KARGKARHEA TTARLYSKPG
841 ESCTQGQTCV GGSACSFRKL CECPQDKSEI SQGQCVTPRK LEVVPGASCN ANTVCTKGST
901 CESGLCRCQP GYIAVSGNCV ALPMSTTPKM RVIAKPLESC ENGETCEGGS NCDYDTGICM
961 CPPGQIVFNV QCMPPPTQPQ ITTRVTTPVK AAPVVTPKPI HSTDCEIDAN CGENKICVSG
1021 KCKCKPGFVD NSGTCEPLEG IRGRSLRYGQ ACDRYQDKCI NGAKCIDKIC KCAPGFLLAP
1081 NGWCEGFDLA KAIEINKQSI GTTPPVKANR VIQTKMQQVY TTSSTISSTT TSPAPTQKPR
1141 IVPKDFPTPP SNIFGFPDRR TTKIVPKVAA VGSACRPIDI CLGESVCTNG FCHCPENYIR
1201 QNGQCISKEC KHKVAKVGET CKNGEICAGG SICDYDRKRC ICAAQHVAIR GICKQKSAPA
1261 FAAPGDTCSM REKCTGGATC FEGMCTCDDH HFAEDGYCRP IEARSSKVQF VNGAGLRFSS
1321 MQVPNRQRAQ ACNEAECKLP NCFCTENGRR APGGLRPDET PQFVVLTFDD AVNGKTFSDY
1381 KKLFENDVLK NPNGCDVKAT FFISHEWTNY DAVNWLVQKN MEIASNSISH ESLENANTNR
1441 WLNEMDGQRR ILAKFGGAPE EEIVGIRSPQ LALGGDNQFE MMIGAEFLWD NSMSANPGIH
1501 GEPFWPQTMD YQVAWDCNEA SCPKSSFPGV WSVPLNQFYG SYMSQIDSFR RSSMLRAAVD
1561 LNNTVDELEE IITRNFERSY SANRAPYVLS LNADFLQLGG HNKGMKAVQK FLNRMSAQKD
1621 VYIVTIKQLI DWMKRPVPIS EMKSSKAVGC PITLSFNRNP SLSTCDIPNK CLYSTPSLSS
1681 QEHQFLTCLP CPTMYPWLEN PAGGIV
//