LOCUS       VTW47535.1               758 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Degenerin deg-1 protein.
ACCESSION   BX284606-1806
PROTEIN_ID  VTW47535.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="deg-1"
                     /locus_tag="CELE_C47C12.6"
                     /standard_name="C47C12.6g"
                     /note="Partially confirmed by transcript evidence"
                     /db_xref="GOA:A0A4V0ILZ4"
                     /db_xref="UniProtKB/TrEMBL:A0A4V0ILZ4"
                     /db_xref="WormBase:WBGene00000950"
     intron_pos      4:1 (1/18)
     intron_pos      32:0 (2/18)
     intron_pos      78:0 (3/18)
     intron_pos      96:0 (4/18)
     intron_pos      129:0 (5/18)
     intron_pos      200:0 (6/18)
     intron_pos      233:0 (7/18)
     intron_pos      254:2 (8/18)
     intron_pos      300:0 (9/18)
     intron_pos      339:1 (10/18)
     intron_pos      357:1 (11/18)
     intron_pos      378:0 (12/18)
     intron_pos      430:2 (13/18)
     intron_pos      518:0 (14/18)
     intron_pos      590:1 (15/18)
     intron_pos      640:0 (16/18)
     intron_pos      664:0 (17/18)
     intron_pos      698:1 (18/18)
BEGIN
        1 MTSEEAARVL IHSTDDAQEQ RMGAENQAPK TTMGAIQRFL NNTTAHGLPR ISKARNQMGR
       61 VFWVFVWLAF FSVFLYQAAQ LYSKFVQKHP STNVKLKFDD VEFPAITFCN LNPYKKSLVM
      121 MVPSIRDTMD VYDNAKTHSK SEGEKKKPKV SRKQHSDASQ QMVRELFAKE IEEGMVELKK
      181 SNKTLQSQNK SGRRRSQRSI ENRRYEAIEA HCKCVGNIGM ECIRFESPPR DPSSKCICTY
      241 DRDMEVAWPC FNISVWYDHE CPLCHDDGYC ESTLPSGTTS SDKWPCMCRN RGDTSERDDT
      301 PYCIGKAGVG KIEIRKLWLE NNMTTTSTTT TTTTTPPPTT TSTTTTTTTT PPPTTTARPN
      361 QRAIVSNPET IKAMGFQGMT DGVAMLTRAK ENLMFTMAAL SDKQRIALSQ SKHEFIEMCS
      421 FNGKECDIDE DFRLHVDPEF GNCFTFNYDV NNNYTSSRAG PMYGIRVLLF VNTSDYMSTS
      481 ESSGVRLAIH PPTEYPFPDT FGYSAPVGFA SSFGIKKKVM QRLPAPYGEC VETKKVVDRN
      541 YIYAGYDYHP EGCHRSCFQN GLIDDCSCGD PRFPVPEGYR HCSAFNATAR TCLEKNIGSV
      601 GDFHHITQKM DKCVCKQSCE EIIHEVTFSC SKWPSGATDL GDCDGMTESE CEQYYRLNAA
      661 MIEVFYEQLN YELLQESEAY GLVNLIADFG GHLGLWLGFS VITVMEVCVL LVDMISLFFK
      721 SRHEEKLLRQ STKRKDVPED KRQITVGSGR KSDAFVSI
//