LOCUS VTW47535.1 758 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Degenerin deg-1 protein. ACCESSION BX284606-1806 PROTEIN_ID VTW47535.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="deg-1" /locus_tag="CELE_C47C12.6" /standard_name="C47C12.6g" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A0A4V0ILZ4" /db_xref="UniProtKB/TrEMBL:A0A4V0ILZ4" /db_xref="WormBase:WBGene00000950" intron_pos 4:1 (1/18) intron_pos 32:0 (2/18) intron_pos 78:0 (3/18) intron_pos 96:0 (4/18) intron_pos 129:0 (5/18) intron_pos 200:0 (6/18) intron_pos 233:0 (7/18) intron_pos 254:2 (8/18) intron_pos 300:0 (9/18) intron_pos 339:1 (10/18) intron_pos 357:1 (11/18) intron_pos 378:0 (12/18) intron_pos 430:2 (13/18) intron_pos 518:0 (14/18) intron_pos 590:1 (15/18) intron_pos 640:0 (16/18) intron_pos 664:0 (17/18) intron_pos 698:1 (18/18) BEGIN 1 MTSEEAARVL IHSTDDAQEQ RMGAENQAPK TTMGAIQRFL NNTTAHGLPR ISKARNQMGR 61 VFWVFVWLAF FSVFLYQAAQ LYSKFVQKHP STNVKLKFDD VEFPAITFCN LNPYKKSLVM 121 MVPSIRDTMD VYDNAKTHSK SEGEKKKPKV SRKQHSDASQ QMVRELFAKE IEEGMVELKK 181 SNKTLQSQNK SGRRRSQRSI ENRRYEAIEA HCKCVGNIGM ECIRFESPPR DPSSKCICTY 241 DRDMEVAWPC FNISVWYDHE CPLCHDDGYC ESTLPSGTTS SDKWPCMCRN RGDTSERDDT 301 PYCIGKAGVG KIEIRKLWLE NNMTTTSTTT TTTTTPPPTT TSTTTTTTTT PPPTTTARPN 361 QRAIVSNPET IKAMGFQGMT DGVAMLTRAK ENLMFTMAAL SDKQRIALSQ SKHEFIEMCS 421 FNGKECDIDE DFRLHVDPEF GNCFTFNYDV NNNYTSSRAG PMYGIRVLLF VNTSDYMSTS 481 ESSGVRLAIH PPTEYPFPDT FGYSAPVGFA SSFGIKKKVM QRLPAPYGEC VETKKVVDRN 541 YIYAGYDYHP EGCHRSCFQN GLIDDCSCGD PRFPVPEGYR HCSAFNATAR TCLEKNIGSV 601 GDFHHITQKM DKCVCKQSCE EIIHEVTFSC SKWPSGATDL GDCDGMTESE CEQYYRLNAA 661 MIEVFYEQLN YELLQESEAY GLVNLIADFG GHLGLWLGFS VITVMEVCVL LVDMISLFFK 721 SRHEEKLLRQ STKRKDVPED KRQITVGSGR KSDAFVSI //