LOCUS VTW47534.1 760 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Degenerin deg-1 protein. ACCESSION BX284606-1813 PROTEIN_ID VTW47534.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="deg-1" /locus_tag="CELE_C47C12.6" /standard_name="C47C12.6f" /note="Confirmed by transcript evidence" /db_xref="GOA:A0A4V0ILJ5" /db_xref="UniProtKB/TrEMBL:A0A4V0ILJ5" /db_xref="WormBase:WBGene00000950" intron_pos 116:0 (1/14) intron_pos 149:0 (2/14) intron_pos 220:0 (3/14) intron_pos 253:0 (4/14) intron_pos 274:2 (5/14) intron_pos 320:0 (6/14) intron_pos 359:1 (7/14) intron_pos 380:0 (8/14) intron_pos 432:2 (9/14) intron_pos 520:0 (10/14) intron_pos 592:1 (11/14) intron_pos 642:0 (12/14) intron_pos 666:0 (13/14) intron_pos 700:1 (14/14) BEGIN 1 MSNHHSKTKK TSMLGREDYI YSHDITNKNK KEKLNGASKN NDYNQDDDDE TMKSKMMDFC 61 DKTTAHGAKR VLIARNSFSK LMWGLIIFSF LLMFAYQASK LIFKFSAHEK ITDISLKFDD 121 VEFPAITFCN LNPYKKSLVM MVPSIRDTMD VYDNAKTHSK SEGEKKKPKV SRKQHSDASQ 181 QMVRELFAKE IEEGMVELKK SNKTLQSQNK SGRRRSQRSI ENRRYEAIEA HCKCVGNIGM 241 ECIRFESPPR DPSSKCICTY DRDMEVAWPC FNISVWYDHE CPLCHDDGYC ESTLPSGTTS 301 SDKWPCMCRN RGDTSERDDT PYCIGKAGVG KIEIRKLWLE NNMTTTSTTT TTTTTPPPTR 361 PNQRAIVSNP ETIKAMGFQG MTDGVAMLTR AKENLMFTMA ALSDKQRIAL SQSKHEFIEM 421 CSFNGKECDI DEDFRLHVDP EFGNCFTFNY DVNNNYTSSR AGPMYGIRVL LFVNTSDYMS 481 TSESSGVRLA IHPPTEYPFP DTFGYSAPVG FASSFGIKKK VMQRLPAPYG ECVETKKVVD 541 RNYIYAGYDY HPEGCHRSCF QNGLIDDCSC GDPRFPVPEG YRHCSAFNAT ARTCLEKNIG 601 SVGDFHHITQ KMDKCVCKQS CEEIIHEVTF SCSKWPSGAT DLGDCDGMTE SECEQYYRLN 661 AAMIEVFYEQ LNYELLQESE AYGLVNLIAD FGGHLGLWLG FSVITVMEVC VLLVDMISLF 721 FKSRHEEKLL RQSTKRKDVP EDKRQITVGS GRKSDAFVSI //