LOCUS       VTW47532.1               770 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Degenerin deg-1 protein.
ACCESSION   BX284606-1811
PROTEIN_ID  VTW47532.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="deg-1"
                     /locus_tag="CELE_C47C12.6"
                     /standard_name="C47C12.6d"
                     /note="Partially confirmed by transcript evidence"
                     /db_xref="GOA:A0A4V0IKC5"
                     /db_xref="UniProtKB/TrEMBL:A0A4V0IKC5"
                     /db_xref="WormBase:WBGene00000950"
     intron_pos      116:0 (1/15)
     intron_pos      149:0 (2/15)
     intron_pos      220:0 (3/15)
     intron_pos      253:0 (4/15)
     intron_pos      274:2 (5/15)
     intron_pos      320:0 (6/15)
     intron_pos      330:0 (7/15)
     intron_pos      369:1 (8/15)
     intron_pos      390:0 (9/15)
     intron_pos      442:2 (10/15)
     intron_pos      530:0 (11/15)
     intron_pos      602:1 (12/15)
     intron_pos      652:0 (13/15)
     intron_pos      676:0 (14/15)
     intron_pos      710:1 (15/15)
BEGIN
        1 MSNHHSKTKK TSMLGREDYI YSHDITNKNK KEKLNGASKN NDYNQDDDDE TMKSKMMDFC
       61 DKTTAHGAKR VLIARNSFSK LMWGLIIFSF LLMFAYQASK LIFKFSAHEK ITDISLKFDD
      121 VEFPAITFCN LNPYKKSLVM MVPSIRDTMD VYDNAKTHSK SEGEKKKPKV SRKQHSDASQ
      181 QMVRELFAKE IEEGMVELKK SNKTLQSQNK SGRRRSQRSI ENRRYEAIEA HCKCVGNIGM
      241 ECIRFESPPR DPSSKCICTY DRDMEVAWPC FNISVWYDHE CPLCHDDGYC ESTLPSGTTS
      301 SDKWPCMCRN RGDTSERDDP LELIYGFRKT PYCIGKAGVG KIEIRKLWLE NNMTTTSTTT
      361 TTTTTPPPTR PNQRAIVSNP ETIKAMGFQG MTDGVAMLTR AKENLMFTMA ALSDKQRIAL
      421 SQSKHEFIEM CSFNGKECDI DEDFRLHVDP EFGNCFTFNY DVNNNYTSSR AGPMYGIRVL
      481 LFVNTSDYMS TSESSGVRLA IHPPTEYPFP DTFGYSAPVG FASSFGIKKK VMQRLPAPYG
      541 ECVETKKVVD RNYIYAGYDY HPEGCHRSCF QNGLIDDCSC GDPRFPVPEG YRHCSAFNAT
      601 ARTCLEKNIG SVGDFHHITQ KMDKCVCKQS CEEIIHEVTF SCSKWPSGAT DLGDCDGMTE
      661 SECEQYYRLN AAMIEVFYEQ LNYELLQESE AYGLVNLIAD FGGHLGLWLG FSVITVMEVC
      721 VLLVDMISLF FKSRHEEKLL RQSTKRKDVP EDKRQITVGS GRKSDAFVSI
//