LOCUS VTW47507.1 567 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Ligand-Gated ion Channel protein. ACCESSION BX284606-2470 PROTEIN_ID VTW47507.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="lgc-41" /locus_tag="CELE_C39B10.2" /standard_name="C39B10.2d" /note="Confirmed by transcript evidence" /db_xref="GOA:A0A4V0IK40" /db_xref="UniProtKB/TrEMBL:A0A4V0IK40" /db_xref="WormBase:WBGene00008022" intron_pos 17:2 (1/14) intron_pos 71:0 (2/14) intron_pos 107:2 (3/14) intron_pos 156:2 (4/14) intron_pos 172:1 (5/14) intron_pos 226:1 (6/14) intron_pos 269:1 (7/14) intron_pos 288:0 (8/14) intron_pos 310:1 (9/14) intron_pos 351:1 (10/14) intron_pos 417:1 (11/14) intron_pos 457:1 (12/14) intron_pos 482:1 (13/14) intron_pos 523:0 (14/14) BEGIN 1 MKKYWSTLHL FQVLCIFIFI RTSSPLTQPN IYNLLQQSNT RPPTANASVP LGVKLGMYLE 61 SLGNFRSSEM SFDVDLYVYM SWQDPRLAHN FSDYVLINND EIRKQIWLPD LYFANARQAS 121 FQEVTVPNFN LFVAPDGTVA YSCRCTLTVA CSLNLRYYPM DQQLCSIRVL SYAYIAKQVN 181 VTWFDKNPVR FNEEIGLPEF QIEHVSNAYC NGSYQYALTE NSYKSDDFSC LSGNLFLSRS 241 IGYNLVQSYI PTGLIVMISW VSFWIDRRAV PARVTLSFTT LVSLTTLGNG LRFGLPQVSY 301 AKAIDLWYGA CMFFVFCALL EFATINSYMR KSEKFDSMAK KMQSVVLTGR TRDYLVRGIK 361 ESMRIAGGAA GNVVDALNDD WCTYSTENGR KSFSAMVGDI FERAGNAISP RRNRYRGLKT 421 EKSPRGYGKP DTVQDILSER IKFIDNEFDF DTKEDDEIPG NMAMSIYDNV SCRKDEADSS 481 SEETKFSTKP KRNGTNGTRK YIDKSLNQSG QNDSLIVATY FQISANHSRH ALKIDKSCRY 541 LFPAAFLLWN VFYWWYYLVY TKTPIDK //