LOCUS VTW47492.1 3198 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Calponin-homology (CH) domain-containing
protein protein.
ACCESSION BX284606-2186
PROTEIN_ID VTW47492.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="fln-2"
/locus_tag="CELE_C23F12.1"
/standard_name="C23F12.1w"
/note="Confirmed by transcript evidence"
/db_xref="UniProtKB/TrEMBL:A0A4V0IK63"
/db_xref="WormBase:WBGene00016006"
intron_pos 28:0 (1/44)
intron_pos 137:0 (2/44)
intron_pos 241:0 (3/44)
intron_pos 292:1 (4/44)
intron_pos 319:1 (5/44)
intron_pos 347:0 (6/44)
intron_pos 368:1 (7/44)
intron_pos 406:0 (8/44)
intron_pos 481:0 (9/44)
intron_pos 510:0 (10/44)
intron_pos 540:0 (11/44)
intron_pos 603:0 (12/44)
intron_pos 647:1 (13/44)
intron_pos 669:0 (14/44)
intron_pos 705:0 (15/44)
intron_pos 752:1 (16/44)
intron_pos 801:1 (17/44)
intron_pos 851:1 (18/44)
intron_pos 891:0 (19/44)
intron_pos 926:2 (20/44)
intron_pos 1018:1 (21/44)
intron_pos 1042:1 (22/44)
intron_pos 1072:2 (23/44)
intron_pos 1098:1 (24/44)
intron_pos 1130:1 (25/44)
intron_pos 1189:0 (26/44)
intron_pos 1255:2 (27/44)
intron_pos 1799:1 (28/44)
intron_pos 1884:1 (29/44)
intron_pos 1945:1 (30/44)
intron_pos 2013:0 (31/44)
intron_pos 2055:1 (32/44)
intron_pos 2129:1 (33/44)
intron_pos 2185:1 (34/44)
intron_pos 2222:1 (35/44)
intron_pos 2310:1 (36/44)
intron_pos 2470:1 (37/44)
intron_pos 2545:1 (38/44)
intron_pos 2604:1 (39/44)
intron_pos 2742:1 (40/44)
intron_pos 2781:2 (41/44)
intron_pos 2830:2 (42/44)
intron_pos 3049:2 (43/44)
intron_pos 3105:0 (44/44)
BEGIN
1 MGKQGEEARQ KWIDIQLHTF TNWINEQLQG NVIRDLTQDL SDGVNLIKLV EILQGRRYYG
61 KVYDQDPTEI QKLMNVQMAL DALREDGVKT VNIGSHDIVD GNEKLILGLI WCLVQRYQIA
121 CKTKIPPKKL VMAWIQSALP ELKLTNFRTN WNDGIALSAL LEYCQPGLCP EWRNLDPSEA
181 RENCHRALLL AERYLEVPPI ISSDHLSSPH LDELSCLTYL SYFITKGAPG YRATLKKVSM
241 LLPDCNVDDL EHSWSDGFLL AHLVEICGGR VPELERMRFD NLNDFVENVA IVLDAAADIG
301 VGSLIGADDI AEPQGEHLGT MALVAALCSV SLEQQVKYTD CYVNQQVNLD LAFTEGNEVR
361 IEELDVQVVG GNGQLYSNEA IKLRKSRTVQ GANLSLMPVE PGFLQVRIYC QGSELPASPI
421 SLQVHTQEET RSSSRAASRA HPENRNPPAS TSKYIERTIV SPVSDSRESG KIAQFSTETE
481 VDISHKSFAQ RRLHIIKQLE AQHVNHIAQT KSHHQQHTQQ QQHHQTVPTQ SSSIVQVVQP
541 IPPPPPTLAQ SSSNIPPPPP IPAVLEASAY REMPLTRSPD VGLVSFSGLT EPCSVGSIVE
601 VVINAHGDAV SGSVYVEAVS PSGNVHRCTV RHQDNSYMAT FTPQEVGLWR IGILYDGEHI
661 RGSPFACQVF DSGLVNVYGL DVGLVGQELN FSVNASQAGH GNLSVTVFRH GREIPLSIEE
721 QGSSKVHQVS FTPDGAGQYK IHVLFNRMEI KGSPFILDIA DASSVSVYGE NLRSASVGKT
781 ASFMVHAIGA EAKDISAHVT GEHSVDVMLA DQRVPDAPFA CNVGAPDLVH VRNMPRRIQP
841 SKLHTDHSFE IDASAAGSGN LEIMINGGRV PCRVRELGSR QYMAIFTPTQ SMTHTIEMRF
901 NGEHVSGSPW KLPVEDRGER RQEMERTMSY YSELSGPGLV RAPVNRTAQF DITGEGLELS
961 DIQAKISGPD NREYPIRIIP RSSGKYTAEY EIEQVGEHHL TVWIAGRKVD GSPLSVAGYA
1021 TEKVRLEPLG GGVPKQPVQF YVDAVEAGKG QLEISVNQGK VPNNVQMQGA GRCLVTFIPQ
1081 HAGTYVIDVT FNGEQVHGCP IKVEILPKQV GQQIHANLTP TAVSTAISAG GTSLISGAFR
1141 ETARSPLSAR SPTSPTLLQH ARQRSEETML RSPQLLRESR KADKPWQSSY APSSSRNAFS
1201 QSPHRDWSAS TVYDRVYNSN SDVERTLSPS DPSRNRNIRE TTTVIHRTPS PTGLRTQEFA
1261 ERIARSPSPT GYEREFVEKR TTYRSPSPAR TSSVAHSHIS EVPLSPIQGM DTPFDHHERV
1321 KKVERMDPLA DEEEREQRRN QLERDSKNTL GYTVAQYGDG EKRYFGDTLE KKDRPPSAGY
1381 YSSVQQRSTS PEYSTVYERY DRKSEKPDLP PRVEGHVSAS YKGYEPVYSE VTTTRTTTTT
1441 EYENIDKKPN VPKKRATTPE GHVEPVNDNE EKDRQAFLRT QSEKVFEPVD APLRRSDEKE
1501 SIYDLPPQER LHKYPEEPTI ALGEKANTSA IAAYTKGRQD DIDEVSRNAS FPSAPTINYN
1561 ERSDEVSNYN RTKEDHYGVV GEYPTAPKIA YSDSKEAVIR EHYAQAKEDP YATVGECPPA
1621 PEISLRSDKL NETKNEYRRT TDSDQQDGKA GPPPPVIEIS KAEQARRTEE YLRVKSEDDK
1681 ILAKHGFTRK PEPSIEIQEP VTEQIRDDVV ETAIAPEVPL RPVEELPHSP APSSRSTPAT
1741 TPKLSAKFRK DGKEGKPFDF GKSKFVCKHD VIKRGKEVEV KLEGIKLGKE DQLRVVVLPP
1801 ANKAIPGANG GPPTEVDTKV KKSSSKYEIS FKPTEVGTHK VFAYVNDMQH PLSPFAVRVY
1861 DASEIIVGEI PNQSNLNDTV EFTVDAGRAG FGNLEMAIKD ADGVIIPSHV AQLESGSAKF
1921 LVTFTPATKG PHTVNITFNK EVLKNSPFEV NIVDAPLPAP VVLEPASGAS AVASPSLSKK
1981 ELKEQEKEKK REEKERAKRE KEERATLKKE KKSKSHRFPA KTTVSKIPSL SRVGQPSSLV
2041 VEVSGHDQLE IRVLDSKKSE IGTDIVEIEP GHMQINFTPA QVGDHEIDVR YGGVPVTGSP
2101 FTCRAYDPAK IKVGAIPKGL LDKPVYFTVD ASEAGVGNLE VAVCEGRVPS MAHALGHHKY
2161 DISFVPKEDV DHTITVRFNN EPVPGSPFLC QLVATAQATA TGAGLERIPV DEETEIQILT
2221 DEIDSAPEAR VRDPQGNDLP VNVTRSRENE TLHIATYVPK CVGNHLIDIF LQGEPIAGSP
2281 FTAKAYDARK TVLVPPANAV VGKPATFVID AARSGAGNME IIVSVDNRNV PNFVQAEGQA
2341 RFKVSFTPQD AKDHTISVKF NGISVPGSPL ICSVSSAGSV PAAVVLPAAA VIGAETAVAA
2401 RERIKHTPQH SSEQIKQTTT TVLQKTPEIR ETVEKTGLAR ELNSAQIGQK KGFTIDNINK
2461 SSDCNVIITD PKGGPLPVRC YKQQDDSYWV EFTPEHLGTH TIEVTFGDVP VPGSPFKTEV
2521 IDPKNVEIRG LSDQVLLRHA TTINVDRRNA GNGELQVEIT DPTGSPLRTE MLKSPGGEDR
2581 ITFLPNQTGP HKINVKVAGF QIPGYPQTIL VSEQEKPAVY GAAVDQSIKI GEPASLIFDP
2641 KKTNGGLKIH ATGPDGQKVH HNVMRRPNGT SEVVFYPEET GTYNVSIDFN NRPITGSPFT
2701 VNVVDPTKVI VNDLDMDRDG TLLLRLGHSN SFDVDATAAG PGKLRAEVRD ADSSLIGNGP
2761 VVEDMGQGKY RVRFNPDQPG KYSIYLYWNE LPVESAFPVR ARSSAEDLPT TSRAVREPIP
2821 PPVTTTYHTR EKSSGSNADD EISRIMVRGD GLHRAVLKEH NEFIIDGSDI NKEGRITATL
2881 LGSKADIPVR IQQLGHNVYK ATYTPLTGGT YELHILWNGK HVKGSPFAVS ADTSAHLADL
2941 IDVDASTLKI GIINENIKTL IDTRRAGSGQ LSALCMGPNK PAYCELYDHR DGTYALCVRP
3001 AEIGKHTLVI KYDDEHVKGS PFVVHVSLPP DPSKVRVYGP GVEHGILSLF KSNFVVETRG
3061 AGAGQLTVRV RGPKGAFNVE MQREKKNERT IHCKYEPKEP GDYQVEVKWH GEHVPGSPFL
3121 VMIVDTEKEL SRYLRGEAPS PTPATPFIPP GWVAPPQMYP MQPGQQRFLP PPGHFGPMGV
3181 PSPYGSVPPP TKHKGRNH
//