LOCUS VTW47490.1 3229 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Calponin-homology (CH) domain-containing
protein protein.
ACCESSION BX284606-2184
PROTEIN_ID VTW47490.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="fln-2"
/locus_tag="CELE_C23F12.1"
/standard_name="C23F12.1u"
/note="Confirmed by transcript evidence"
/db_xref="UniProtKB/TrEMBL:A0A4V0IN32"
/db_xref="WormBase:WBGene00016006"
intron_pos 28:0 (1/45)
intron_pos 137:0 (2/45)
intron_pos 241:0 (3/45)
intron_pos 292:1 (4/45)
intron_pos 319:1 (5/45)
intron_pos 347:0 (6/45)
intron_pos 368:1 (7/45)
intron_pos 406:0 (8/45)
intron_pos 481:0 (9/45)
intron_pos 510:0 (10/45)
intron_pos 540:0 (11/45)
intron_pos 603:0 (12/45)
intron_pos 647:1 (13/45)
intron_pos 669:0 (14/45)
intron_pos 705:0 (15/45)
intron_pos 752:1 (16/45)
intron_pos 801:1 (17/45)
intron_pos 851:1 (18/45)
intron_pos 891:0 (19/45)
intron_pos 926:2 (20/45)
intron_pos 1018:1 (21/45)
intron_pos 1042:1 (22/45)
intron_pos 1072:2 (23/45)
intron_pos 1098:1 (24/45)
intron_pos 1130:1 (25/45)
intron_pos 1189:0 (26/45)
intron_pos 1255:2 (27/45)
intron_pos 1286:2 (28/45)
intron_pos 1830:1 (29/45)
intron_pos 1915:1 (30/45)
intron_pos 1976:1 (31/45)
intron_pos 2044:0 (32/45)
intron_pos 2086:1 (33/45)
intron_pos 2160:1 (34/45)
intron_pos 2216:1 (35/45)
intron_pos 2253:1 (36/45)
intron_pos 2341:1 (37/45)
intron_pos 2501:1 (38/45)
intron_pos 2576:1 (39/45)
intron_pos 2635:1 (40/45)
intron_pos 2773:1 (41/45)
intron_pos 2812:2 (42/45)
intron_pos 2861:2 (43/45)
intron_pos 3080:2 (44/45)
intron_pos 3136:0 (45/45)
BEGIN
1 MGKQGEEARQ KWIDIQLHTF TNWINEQLQG NVIRDLTQDL SDGVNLIKLV EILQGRRYYG
61 KVYDQDPTEI QKLMNVQMAL DALREDGVKT VNIGSHDIVD GNEKLILGLI WCLVQRYQIA
121 CKTKIPPKKL VMAWIQSALP ELKLTNFRTN WNDGIALSAL LEYCQPGLCP EWRNLDPSEA
181 RENCHRALLL AERYLEVPPI ISSDHLSSPH LDELSCLTYL SYFITKGAPG YRATLKKVSM
241 LLPDCNVDDL EHSWSDGFLL AHLVEICGGR VPELERMRFD NLNDFVENVA IVLDAAADIG
301 VGSLIGADDI AEPQGEHLGT MALVAALCSV SLEQQVKYTD CYVNQQVNLD LAFTEGNEVR
361 IEELDVQVVG GNGQLYSNEA IKLRKSRTVQ GANLSLMPVE PGFLQVRIYC QGSELPASPI
421 SLQVHTQEET RSSSRAASRA HPENRNPPAS TSKYIERTIV SPVSDSRESG KIAQFSTETE
481 VDISHKSFAQ RRLHIIKQLE AQHVNHIAQT KSHHQQHTQQ QQHHQTVPTQ SSSIVQVVQP
541 IPPPPPTLAQ SSSNIPPPPP IPAVLEASAY REMPLTRSPD VGLVSFSGLT EPCSVGSIVE
601 VVINAHGDAV SGSVYVEAVS PSGNVHRCTV RHQDNSYMAT FTPQEVGLWR IGILYDGEHI
661 RGSPFACQVF DSGLVNVYGL DVGLVGQELN FSVNASQAGH GNLSVTVFRH GREIPLSIEE
721 QGSSKVHQVS FTPDGAGQYK IHVLFNRMEI KGSPFILDIA DASSVSVYGE NLRSASVGKT
781 ASFMVHAIGA EAKDISAHVT GEHSVDVMLA DQRVPDAPFA CNVGAPDLVH VRNMPRRIQP
841 SKLHTDHSFE IDASAAGSGN LEIMINGGRV PCRVRELGSR QYMAIFTPTQ SMTHTIEMRF
901 NGEHVSGSPW KLPVEDRGER RQEMERTMSY YSELSGPGLV RAPVNRTAQF DITGEGLELS
961 DIQAKISGPD NREYPIRIIP RSSGKYTAEY EIEQVGEHHL TVWIAGRKVD GSPLSVAGYA
1021 TEKVRLEPLG GGVPKQPVQF YVDAVEAGKG QLEISVNQGK VPNNVQMQGA GRCLVTFIPQ
1081 HAGTYVIDVT FNGEQVHGCP IKVEILPKQV GQQIHANLTP TAVSTAISAG GTSLISGAFR
1141 ETARSPLSAR SPTSPTLLQH ARQRSEETML RSPQLLRESR KADKPWQSSY APSSSRNAFS
1201 QSPHRDWSAS TVYDRVYNSN SDVERTLSPS DPSRNRNIRE TTTVIHRTPS PTGLRSTQIT
1261 ETITRTTHRS PSPPRGVSNT SFGSVRTQEF AERIARSPSP TGYEREFVEK RTTYRSPSPA
1321 RTSSVAHSHI SEVPLSPIQG MDTPFDHHER VKKVERMDPL ADEEEREQRR NQLERDSKNT
1381 LGYTVAQYGD GEKRYFGDTL EKKDRPPSAG YYSSVQQRST SPEYSTVYER YDRKSEKPDL
1441 PPRVEGHVSA SYKGYEPVYS EVTTTRTTTT TEYENIDKKP NVPKKRATTP EGHVEPVNDN
1501 EEKDRQAFLR TQSEKVFEPV DAPLRRSDEK ESIYDLPPQE RLHKYPEEPT IALGEKANTS
1561 AIAAYTKGRQ DDIDEVSRNA SFPSAPTINY NERSDEVSNY NRTKEDHYGV VGEYPTAPKI
1621 AYSDSKEAVI REHYAQAKED PYATVGECPP APEISLRSDK LNETKNEYRR TTDSDQQDGK
1681 AGPPPPVIEI SKAEQARRTE EYLRVKSEDD KILAKHGFTR KPEPSIEIQE PVTEQIRDDV
1741 VETAIAPEVP LRPVEELPHS PAPSSRSTPA TTPKLSAKFR KDGKEGKPFD FGKSKFVCKH
1801 DVIKRGKEVE VKLEGIKLGK EDQLRVVVLP PANKAIPGAN GGPPTEVDTK VKKSSSKYEI
1861 SFKPTEVGTH KVFAYVNDMQ HPLSPFAVRV YDASEIIVGE IPNQSNLNDT VEFTVDAGRA
1921 GFGNLEMAIK DADGVIIPSH VAQLESGSAK FLVTFTPATK GPHTVNITFN KEVLKNSPFE
1981 VNIVDAPLPA PVVLEPASGA SAVASPSLSK KELKEQEKEK KREEKERAKR EKEERATLKK
2041 EKKSKSHRFP AKTTVSKIPS LSRVGQPSSL VVEVSGHDQL EIRVLDSKKS EIGTDIVEIE
2101 PGHMQINFTP AQVGDHEIDV RYGGVPVTGS PFTCRAYDPA KIKVGAIPKG LLDKPVYFTV
2161 DASEAGVGNL EVAVCEGRVP SMAHALGHHK YDISFVPKED VDHTITVRFN NEPVPGSPFL
2221 CQLVATAQAT ATGAGLERIP VDEETEIQIL TDEIDSAPEA RVRDPQGNDL PVNVTRSREN
2281 ETLHIATYVP KCVGNHLIDI FLQGEPIAGS PFTAKAYDAR KTVLVPPANA VVGKPATFVI
2341 DAARSGAGNM EIIVSVDNRN VPNFVQAEGQ ARFKVSFTPQ DAKDHTISVK FNGISVPGSP
2401 LICSVSSAGS VPAAVVLPAA AVIGAETAVA ARERIKHTPQ HSSEQIKQTT TTVLQKTPEI
2461 RETVEKTGLA RELNSAQIGQ KKGFTIDNIN KSSDCNVIIT DPKGGPLPVR CYKQQDDSYW
2521 VEFTPEHLGT HTIEVTFGDV PVPGSPFKTE VIDPKNVEIR GLSDQVLLRH ATTINVDRRN
2581 AGNGELQVEI TDPTGSPLRT EMLKSPGGED RITFLPNQTG PHKINVKVAG FQIPGYPQTI
2641 LVSEQEKPAV YGAAVDQSIK IGEPASLIFD PKKTNGGLKI HATGPDGQKV HHNVMRRPNG
2701 TSEVVFYPEE TGTYNVSIDF NNRPITGSPF TVNVVDPTKV IVNDLDMDRD GTLLLRLGHS
2761 NSFDVDATAA GPGKLRAEVR DADSSLIGNG PVVEDMGQGK YRVRFNPDQP GKYSIYLYWN
2821 ELPVESAFPV RARSSAEDLP TTSRAVREPI PPPVTTTYHT REKSSGSNAD DEISRIMVRG
2881 DGLHRAVLKE HNEFIIDGSD INKEGRITAT LLGSKADIPV RIQQLGHNVY KATYTPLTGG
2941 TYELHILWNG KHVKGSPFAV SADTSAHLAD LIDVDASTLK IGIINENIKT LIDTRRAGSG
3001 QLSALCMGPN KPAYCELYDH RDGTYALCVR PAEIGKHTLV IKYDDEHVKG SPFVVHVSLP
3061 PDPSKVRVYG PGVEHGILSL FKSNFVVETR GAGAGQLTVR VRGPKGAFNV EMQREKKNER
3121 TIHCKYEPKE PGDYQVEVKW HGEHVPGSPF LVMIVDTEKE LSRYLRGEAP SPTPATPFIP
3181 PGWVAPPQMY PMQPGQQRFL PPPGHFGPMG VPSPYGSVPP PTKHKGRNH
//