LOCUS VTW47487.1 3257 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Calponin-homology (CH) domain-containing
protein protein.
ACCESSION BX284606-2181
PROTEIN_ID VTW47487.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="fln-2"
/locus_tag="CELE_C23F12.1"
/standard_name="C23F12.1r"
/note="Confirmed by transcript evidence"
/db_xref="UniProtKB/TrEMBL:A0A4V0IK09"
/db_xref="WormBase:WBGene00016006"
intron_pos 28:0 (1/46)
intron_pos 137:0 (2/46)
intron_pos 241:0 (3/46)
intron_pos 292:1 (4/46)
intron_pos 319:1 (5/46)
intron_pos 347:0 (6/46)
intron_pos 368:1 (7/46)
intron_pos 406:0 (8/46)
intron_pos 481:0 (9/46)
intron_pos 510:0 (10/46)
intron_pos 540:0 (11/46)
intron_pos 603:0 (12/46)
intron_pos 647:1 (13/46)
intron_pos 669:0 (14/46)
intron_pos 705:0 (15/46)
intron_pos 752:1 (16/46)
intron_pos 801:1 (17/46)
intron_pos 829:1 (18/46)
intron_pos 879:1 (19/46)
intron_pos 919:0 (20/46)
intron_pos 954:2 (21/46)
intron_pos 1046:1 (22/46)
intron_pos 1070:1 (23/46)
intron_pos 1100:2 (24/46)
intron_pos 1126:1 (25/46)
intron_pos 1158:1 (26/46)
intron_pos 1217:0 (27/46)
intron_pos 1283:2 (28/46)
intron_pos 1314:2 (29/46)
intron_pos 1858:1 (30/46)
intron_pos 1943:1 (31/46)
intron_pos 2004:1 (32/46)
intron_pos 2072:0 (33/46)
intron_pos 2114:1 (34/46)
intron_pos 2188:1 (35/46)
intron_pos 2244:1 (36/46)
intron_pos 2281:1 (37/46)
intron_pos 2369:1 (38/46)
intron_pos 2529:1 (39/46)
intron_pos 2604:1 (40/46)
intron_pos 2663:1 (41/46)
intron_pos 2801:1 (42/46)
intron_pos 2840:2 (43/46)
intron_pos 2889:2 (44/46)
intron_pos 3108:2 (45/46)
intron_pos 3164:0 (46/46)
BEGIN
1 MGKQGEEARQ KWIDIQLHTF TNWINEQLQG NVIRDLTQDL SDGVNLIKLV EILQGRRYYG
61 KVYDQDPTEI QKLMNVQMAL DALREDGVKT VNIGSHDIVD GNEKLILGLI WCLVQRYQIA
121 CKTKIPPKKL VMAWIQSALP ELKLTNFRTN WNDGIALSAL LEYCQPGLCP EWRNLDPSEA
181 RENCHRALLL AERYLEVPPI ISSDHLSSPH LDELSCLTYL SYFITKGAPG YRATLKKVSM
241 LLPDCNVDDL EHSWSDGFLL AHLVEICGGR VPELERMRFD NLNDFVENVA IVLDAAADIG
301 VGSLIGADDI AEPQGEHLGT MALVAALCSV SLEQQVKYTD CYVNQQVNLD LAFTEGNEVR
361 IEELDVQVVG GNGQLYSNEA IKLRKSRTVQ GANLSLMPVE PGFLQVRIYC QGSELPASPI
421 SLQVHTQEET RSSSRAASRA HPENRNPPAS TSKYIERTIV SPVSDSRESG KIAQFSTETE
481 VDISHKSFAQ RRLHIIKQLE AQHVNHIAQT KSHHQQHTQQ QQHHQTVPTQ SSSIVQVVQP
541 IPPPPPTLAQ SSSNIPPPPP IPAVLEASAY REMPLTRSPD VGLVSFSGLT EPCSVGSIVE
601 VVINAHGDAV SGSVYVEAVS PSGNVHRCTV RHQDNSYMAT FTPQEVGLWR IGILYDGEHI
661 RGSPFACQVF DSGLVNVYGL DVGLVGQELN FSVNASQAGH GNLSVTVFRH GREIPLSIEE
721 QGSSKVHQVS FTPDGAGQYK IHVLFNRMEI KGSPFILDIA DASSVSVYGE NLRSASVGKT
781 ASFMVHAIGA EAKDISAHVT VPSGGKFPAK VVTLDDVTFQ IEWTPKEPGE HSVDVMLADQ
841 RVPDAPFACN VGAPDLVHVR NMPRRIQPSK LHTDHSFEID ASAAGSGNLE IMINGGRVPC
901 RVRELGSRQY MAIFTPTQSM THTIEMRFNG EHVSGSPWKL PVEDRGERRQ EMERTMSYYS
961 ELSGPGLVRA PVNRTAQFDI TGEGLELSDI QAKISGPDNR EYPIRIIPRS SGKYTAEYEI
1021 EQVGEHHLTV WIAGRKVDGS PLSVAGYATE KVRLEPLGGG VPKQPVQFYV DAVEAGKGQL
1081 EISVNQGKVP NNVQMQGAGR CLVTFIPQHA GTYVIDVTFN GEQVHGCPIK VEILPKQVGQ
1141 QIHANLTPTA VSTAISAGGT SLISGAFRET ARSPLSARSP TSPTLLQHAR QRSEETMLRS
1201 PQLLRESRKA DKPWQSSYAP SSSRNAFSQS PHRDWSASTV YDRVYNSNSD VERTLSPSDP
1261 SRNRNIRETT TVIHRTPSPT GLRSTQITET ITRTTHRSPS PPRGVSNTSF GSVRTQEFAE
1321 RIARSPSPTG YEREFVEKRT TYRSPSPART SSVAHSHISE VPLSPIQGMD TPFDHHERVK
1381 KVERMDPLAD EEEREQRRNQ LERDSKNTLG YTVAQYGDGE KRYFGDTLEK KDRPPSAGYY
1441 SSVQQRSTSP EYSTVYERYD RKSEKPDLPP RVEGHVSASY KGYEPVYSEV TTTRTTTTTE
1501 YENIDKKPNV PKKRATTPEG HVEPVNDNEE KDRQAFLRTQ SEKVFEPVDA PLRRSDEKES
1561 IYDLPPQERL HKYPEEPTIA LGEKANTSAI AAYTKGRQDD IDEVSRNASF PSAPTINYNE
1621 RSDEVSNYNR TKEDHYGVVG EYPTAPKIAY SDSKEAVIRE HYAQAKEDPY ATVGECPPAP
1681 EISLRSDKLN ETKNEYRRTT DSDQQDGKAG PPPPVIEISK AEQARRTEEY LRVKSEDDKI
1741 LAKHGFTRKP EPSIEIQEPV TEQIRDDVVE TAIAPEVPLR PVEELPHSPA PSSRSTPATT
1801 PKLSAKFRKD GKEGKPFDFG KSKFVCKHDV IKRGKEVEVK LEGIKLGKED QLRVVVLPPA
1861 NKAIPGANGG PPTEVDTKVK KSSSKYEISF KPTEVGTHKV FAYVNDMQHP LSPFAVRVYD
1921 ASEIIVGEIP NQSNLNDTVE FTVDAGRAGF GNLEMAIKDA DGVIIPSHVA QLESGSAKFL
1981 VTFTPATKGP HTVNITFNKE VLKNSPFEVN IVDAPLPAPV VLEPASGASA VASPSLSKKE
2041 LKEQEKEKKR EEKERAKREK EERATLKKEK KSKSHRFPAK TTVSKIPSLS RVGQPSSLVV
2101 EVSGHDQLEI RVLDSKKSEI GTDIVEIEPG HMQINFTPAQ VGDHEIDVRY GGVPVTGSPF
2161 TCRAYDPAKI KVGAIPKGLL DKPVYFTVDA SEAGVGNLEV AVCEGRVPSM AHALGHHKYD
2221 ISFVPKEDVD HTITVRFNNE PVPGSPFLCQ LVATAQATAT GAGLERIPVD EETEIQILTD
2281 EIDSAPEARV RDPQGNDLPV NVTRSRENET LHIATYVPKC VGNHLIDIFL QGEPIAGSPF
2341 TAKAYDARKT VLVPPANAVV GKPATFVIDA ARSGAGNMEI IVSVDNRNVP NFVQAEGQAR
2401 FKVSFTPQDA KDHTISVKFN GISVPGSPLI CSVSSAGSVP AAVVLPAAAV IGAETAVAAR
2461 ERIKHTPQHS SEQIKQTTTT VLQKTPEIRE TVEKTGLARE LNSAQIGQKK GFTIDNINKS
2521 SDCNVIITDP KGGPLPVRCY KQQDDSYWVE FTPEHLGTHT IEVTFGDVPV PGSPFKTEVI
2581 DPKNVEIRGL SDQVLLRHAT TINVDRRNAG NGELQVEITD PTGSPLRTEM LKSPGGEDRI
2641 TFLPNQTGPH KINVKVAGFQ IPGYPQTILV SEQEKPAVYG AAVDQSIKIG EPASLIFDPK
2701 KTNGGLKIHA TGPDGQKVHH NVMRRPNGTS EVVFYPEETG TYNVSIDFNN RPITGSPFTV
2761 NVVDPTKVIV NDLDMDRDGT LLLRLGHSNS FDVDATAAGP GKLRAEVRDA DSSLIGNGPV
2821 VEDMGQGKYR VRFNPDQPGK YSIYLYWNEL PVESAFPVRA RSSAEDLPTT SRAVREPIPP
2881 PVTTTYHTRE KSSGSNADDE ISRIMVRGDG LHRAVLKEHN EFIIDGSDIN KEGRITATLL
2941 GSKADIPVRI QQLGHNVYKA TYTPLTGGTY ELHILWNGKH VKGSPFAVSA DTSAHLADLI
3001 DVDASTLKIG IINENIKTLI DTRRAGSGQL SALCMGPNKP AYCELYDHRD GTYALCVRPA
3061 EIGKHTLVIK YDDEHVKGSP FVVHVSLPPD PSKVRVYGPG VEHGILSLFK SNFVVETRGA
3121 GAGQLTVRVR GPKGAFNVEM QREKKNERTI HCKYEPKEPG DYQVEVKWHG EHVPGSPFLV
3181 MIVDTEKELS RYLRGEAPSP TPATPFIPPG WVAPPQMYPM QPGQQRFLPP PGHFGPMGVP
3241 SPYGSVPPPT KHKGRNH
//