LOCUS VTW47478.1 1232 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Protein kinase domain-containing
protein protein.
ACCESSION BX284606-3280
PROTEIN_ID VTW47478.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="gck-4"
/locus_tag="CELE_C04A11.3"
/standard_name="C04A11.3b"
/note="Confirmed by transcript evidence"
/db_xref="GOA:A0A4V0IKG6"
/db_xref="UniProtKB/TrEMBL:A0A4V0IKG6"
/db_xref="WormBase:WBGene00007287"
intron_pos 26:0 (1/11)
intron_pos 108:0 (2/11)
intron_pos 198:2 (3/11)
intron_pos 410:0 (4/11)
intron_pos 542:1 (5/11)
intron_pos 624:1 (6/11)
intron_pos 832:2 (7/11)
intron_pos 1024:2 (8/11)
intron_pos 1101:0 (9/11)
intron_pos 1152:0 (10/11)
intron_pos 1198:0 (11/11)
BEGIN
1 MAFLNKVKNL FRANQAEKKL PSYIYDNVNP RDHWNIIGEL GDGAFGKVEK AVSRTDPKLF
61 AASKSIEIQE GEELEDFLVE IEILSECKGH PVMLGLYSTY FFENKLTMLL EFCGGGAVDN
121 IIVELGHVLK EDQIRYIGYY VCDALKWLHS QNVIHRDLKA GNILLTQDGQ VRLADFGVSA
181 KLKSEREKRD TFIGTPYWMA PEVMACETFK DQPYDCISDI WSFGITLIEM AQGEPPHSDV
241 SVMRVIIKVQ KSEPPTLLQP SHWTRSFSDI LTRCLVKDPR NRPPAAEIFK HQWFQNAPSK
301 RKMIMDLLAE MYADVQEEVV IDGDEESVAG SDEISQRRGD SWSSASDSPR PATSDGFKVP
361 IVSVPIIETP PPDTPHKKRA APPPPQEVNA HRQSPVVNGK PAENSSFAEF SFSNSNTSSE
421 GTAEFSTPST NKSSAQLSTP AVLSLNTSGS PSSANEFVSP RREALSILDE LTTTLDDEQG
481 STFFNSPRSS ASPRQSPRRS PHESPRHSPR NSPQKEQLFE HSIRDTIMAS RSRPSLSPQL
541 RQLSPSESAS SFDESVNLSF HKLEPAEHAG YVMAHQQMEK TTAQLNERAN AVSNIRTQME
601 EKIADSSNSK QRPISQPITE IPEGIVAQKK VSREEAEAVQ HSNALFKKPS QDMSASLTVR
661 DMAQQKTELR VSSASTPTKT RASPPKRAES NQSVRTSGSS NSVVQHSASS STDYVPTSVS
721 AVPEYFDGPR RNGEQKVPPP EPPVDYEGNA KENAAPSPVP VPKISQKPVP TPSTSTDVQK
781 TNSNVAPRPL GGRKDGNRQT ITKKTRTYMI DGVQVTSTTV HVLGVKDDKV QRKQQLHDLR
841 RLQRDEARQK QELQAEGIKL VEEQARKFTS EQTNLTRTSE LEMDAMERRQ RKEIEDTEGA
901 QEHELRNAQK RLRIEQEKDM RAFKERLKQE MKIFKQELTM LSKVQRKDAL KQRKEQIEIE
961 HQLKEKDFLM QLQQNAEAML QRMAEKHKER MASIEKQFLM QKHNLLRAKE NNIWELEDKQ
1021 MREKFVLHRK LFKDEYYLLR TQMLARHQRE MAQIEKIHQE EEDDLIRALT LDRKKLPKML
1081 RSETKTRSVM FKESLRISAV YDFKNMSNAE MQERIRRFDE QEALRMRAAL EDHDLKSQKK
1141 LQILKERHQE AIIELDEMQN EKRKQLLEKE RNTMKEHEAK YHEMRELWQE NLIARKTVLE
1201 EKFEDELSKQ EVFYGMSYTS SQASTLSGRH MP
//