LOCUS VTW47469.1 1081 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Suppressor of Constitutive Dauer
formation protein.
ACCESSION BX284606-3018
PROTEIN_ID VTW47469.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="scd-1"
/locus_tag="CELE_H20J18.1"
/standard_name="H20J18.1c"
/note="Confirmed by transcript evidence"
/db_xref="UniProtKB/TrEMBL:A0A4V0IN69"
/db_xref="WormBase:WBGene00004739"
intron_pos 102:1 (1/12)
intron_pos 134:1 (2/12)
intron_pos 155:0 (3/12)
intron_pos 462:2 (4/12)
intron_pos 721:1 (5/12)
intron_pos 766:0 (6/12)
intron_pos 811:0 (7/12)
intron_pos 898:2 (8/12)
intron_pos 929:0 (9/12)
intron_pos 965:0 (10/12)
intron_pos 1020:1 (11/12)
intron_pos 1045:0 (12/12)
BEGIN
1 MWFNGGPPGP PPHGPPPPHL LHALPHPAYP PGHPLHMPGM TMMPMGPVGP PMMAGMPMRP
61 MPPLPPMTPM GSMPHPNDGG PHPMMLPGAP MTQQRQRPGI RAEASTSSSL VDDKAKKQRK
121 SSKVTATPQK RSEEMNVGNG INPVNHGITP AQMQSLHSMG LNPAQLAMMM QLPNGVQLQQ
181 PQQSTANNPA AVSSAQQIVN VQAMGHPPVP QPQQHPLVQA QQAQAQAHAQ AQAQAQAQVQ
241 AQAHQAQQAQ AHAQAQAQAQ AQAQAQVQQQ HQLQAQAHAQ QHLQAAQQAQ QAQQAQQLQA
301 SQQQALQQLQ AQQQAQQQAQ QQAQQQAQQQ AQQQAQQQGG QPQASQVAVS SAQQPQAQPQ
361 NSQTAQLLQQ IQAMQAAQAA QQAAQQAAAH QMQQSQFVNA IANPPCPPPP PGIPSMPWPI
421 STPVCHVPYF DVNMYRSVNI EAMPSHDASG MDLPLIDITT LRFFFNLGVQ QSRNLIAARQ
481 HQQVQHQSQN QPGQPPAQQP ATSIQESLSA PPGASPNLIA LVNQPNGGQV PNQNTIEQLN
541 ALIGQQHILR QAQQLQGPQG QAQNQMQQQL IQQQLNQILA RNQQQQQQQM QQQLQQQASN
601 NALQQQLQQL VEQQRQQQQQ QQQSVQNAQI AAAATAAAST STPNSQDRKI PHTELVNASG
661 QSIVGLSSTP GFQVSTPGLT QSATTPIPTS ITPNAQQQFQ KHFEGQTMLL QHALLQHANN
721 STNSASKATL HDIRFQAMAQ QQQQVAASGV GQGQTTLHPF IRPNDTTRQA QLVNGVGDQT
781 VSPRPIPLDP SPPRATSGGS TAASTASWAK EPIINVEDDK PSTSSGPSTT TASHPVNPIG
841 IANPLSAASA AAGFHTTKTS TAVSGNGNPG SNVATPVLSI IQMSEDHFTD TFRKSDQKMH
901 QGQAGNINGQ AVRSPKSDGN DSDERPPALA PILMMSYLNN CMSHAKTHLT ANGHQVGVDD
961 DGQVVDFAAR PIDPIFKDAR EDMKAKDVRT LEHAVKRPFS NNMATHAKNV KESPSPQRHP
1021 GQSPHQIPSP MRQGAHNPLG INRSIPDAAP PKIEADSSRS PSEDLEEDGG GKRLRIATDE
1081 E
//