LOCUS VTW47456.1 5077 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Ig-like domain-containing protein protein.
ACCESSION BX284606-2299
PROTEIN_ID VTW47456.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="him-4"
/locus_tag="CELE_F15G9.4"
/standard_name="F15G9.4f"
/note="Confirmed by transcript evidence"
/db_xref="GOA:A0A4V0IK01"
/db_xref="UniProtKB/TrEMBL:A0A4V0IK01"
/db_xref="WormBase:WBGene00001863"
intron_pos 22:1 (1/60)
intron_pos 237:0 (2/60)
intron_pos 272:1 (3/60)
intron_pos 379:2 (4/60)
intron_pos 509:0 (5/60)
intron_pos 566:1 (6/60)
intron_pos 838:0 (7/60)
intron_pos 879:1 (8/60)
intron_pos 954:0 (9/60)
intron_pos 1087:0 (10/60)
intron_pos 1128:0 (11/60)
intron_pos 1389:0 (12/60)
intron_pos 1419:0 (13/60)
intron_pos 1448:1 (14/60)
intron_pos 1510:0 (15/60)
intron_pos 1544:1 (16/60)
intron_pos 1583:0 (17/60)
intron_pos 1619:1 (18/60)
intron_pos 1686:2 (19/60)
intron_pos 1740:0 (20/60)
intron_pos 1770:0 (21/60)
intron_pos 2090:1 (22/60)
intron_pos 2157:2 (23/60)
intron_pos 2284:1 (24/60)
intron_pos 2414:2 (25/60)
intron_pos 2496:0 (26/60)
intron_pos 2602:0 (27/60)
intron_pos 2661:1 (28/60)
intron_pos 2754:1 (29/60)
intron_pos 2792:0 (30/60)
intron_pos 2816:0 (31/60)
intron_pos 2843:1 (32/60)
intron_pos 2870:0 (33/60)
intron_pos 2894:0 (34/60)
intron_pos 2935:1 (35/60)
intron_pos 2986:0 (36/60)
intron_pos 3027:1 (37/60)
intron_pos 3052:0 (38/60)
intron_pos 3095:2 (39/60)
intron_pos 3117:1 (40/60)
intron_pos 3160:1 (41/60)
intron_pos 3567:1 (42/60)
intron_pos 3625:0 (43/60)
intron_pos 3666:1 (44/60)
intron_pos 3712:1 (45/60)
intron_pos 3759:1 (46/60)
intron_pos 3945:1 (47/60)
intron_pos 4089:1 (48/60)
intron_pos 4127:1 (49/60)
intron_pos 4263:1 (50/60)
intron_pos 4310:1 (51/60)
intron_pos 4358:1 (52/60)
intron_pos 4400:1 (53/60)
intron_pos 4550:0 (54/60)
intron_pos 4740:1 (55/60)
intron_pos 4781:1 (56/60)
intron_pos 4843:1 (57/60)
intron_pos 4913:1 (58/60)
intron_pos 4979:1 (59/60)
intron_pos 5012:1 (60/60)
BEGIN
1 MRQLSKVYVH GGGDCPEKTL TGILKALQIS LPSSFIYVFT DARSKDYHLE DEVLNTIQEK
61 QSSVVFVMTG DCGNRTHPGF RTYEKIAAAS FGQVFHLEKS DVSTVLEYVR HAVKQKKVHL
121 MYEARERGGT VSRNIPVDKH LSELTISLSG DKDDSDNLDI VLRDPEGRTV DKRLYSKEGG
181 TIDLKNVKLI RLKDPSPGVW TVNTNSRLKH TIRVFGHGAV DFKYGFASRP LDRIELARPR
241 PVLNQDTYLL INMTGLIPPG TVGEIDLVDY HGHSLYKAVA SPHRTNPNMY FAGPFVPPKG
301 LFFVRVQGYD EDNYEFMRIA PTAIGSVIVG GPRAFMSPIH QEFVGRDLNL SCTVESASAY
361 TIYWVKTGED IIGGPLFYHN TDTSVWTIPE LSLKDAGEYE CRVISNNGNY SVKTRVETRE
421 SPPEIFGVRN VSVPLGEAAF LHCSTRSAGE VEIRWTRYGA TVFNGPNTER NPTNGTLKIH
481 HVTRADAGVY ECMARNAGGM STRKMRLDIM EPPSVKVTPQ DVYFNMREGV NLSCEAMGDP
541 KPEVHWYFKG RHLLNDYKYQ VGQDSKFLYI RDATHHDEGT YECRAMSQAG QARDTTDLML
601 ATPPKVEIIQ NKMMVGRGDR VSFECKTIRG KPHPKIRWFK NGKDLIKPDD YIKINEGQLH
661 IMGAKDEDAG AYSCVGENMA GKDVQVANLS VGRVPTIIES PHTVRVNIER QVTLQCLAVG
721 IPPPEIEWQK GNVLLATLNN PRYTQLADGN LLITDAQIED QGQFTCIARN TYGQQSQSTT
781 LMVTGLVSPV LGHVPPEEQL IEGQDLTLSC VVVLGTPKPS IVWIKDDKPV EEGPTIKIEG
841 GGSLLRLRGG NPKDEGKYTC IAVSPAGNST LHINVQLIKK PEFVYKPEGG IVFKPTISGM
901 DEKHVAVVNS THDVLDGEGF AIPCVVSGTP PPIITWYLDG RPITPNSRDF TVTADNTLIV
961 RKADKSYSGV YTCQATNSAG DNEQKTTIRI MNTPMISPGQ SSFNMVVDDL FTIPCDVYGD
1021 PKPVITWLLD DKPFTEGVVN EDGSLTIPNV NEAHRGTFTC HAQNAAGNDT RTVTLTVHTT
1081 PTINAENQEK IALQNDDIVL ECPAKALPPP VRLWTYEGEK IDSQLIPHTI REDGALVLQN
1141 VKLENTGVFV CQVSNLAGED SLSYTLTVHE KPKIISEVPG VVDVVKGFTI EIPCRATGVP
1201 EVIRTWNKNG IDLKMDEKKF SVDNLGTLRI YEADKNDIGN YNCVVTNEAG TSQMTTHVDV
1261 QEPPIILPST QTNNTAVVGD RVELKCYVEA SPPASVTWFR RGIAIGTDTK GYVVESDGTL
1321 VIQSASVEDA TIYTCKASNP AGKAEANLQV TVIASPDIKD PDVVTQESIK ESHPFSLYCP
1381 VFSNPLPQIS WYLNDKPLID DKTSWKTSDD KRKLHVFKAK ITDSGVYKCV ARNAAGEGSK
1441 SFQVEVIVPL NLDESKYKKK VFAKEGEEVT LGCPVSGFPV PQINWVVDGT VVEPGKKYKG
1501 ATLSNDGLTL HFDSVSVKQE GNYHCVAQSK GNILDIDVEL SVLAVPIVGE DDNLEVFLGK
1561 DISLSCDLQT ESDDKTTFVW SINGSESDRP DNVQIPSDGH RLYITDAKPE NNGKYMCRVT
1621 NSAGKAERTL TLDVLEPPVF VEPVFEANQK LIGNNPIILQ CQVTGNPKPT VIWKIDGNDV
1681 DKSWLFDESL SLLRIEKLTG KSAQISCTAE NKAGTASRDF FIQNIAAPTF KNEGDQETIF
1741 RESETITLDC PVSLGDFQIT WMKQGLPLTE NDAIFTLDNT RLTILNANRD HEDIYTCVAN
1801 NTAGQVSKDF DVVVQVLPKI KNAVVTLEIN EGEEIILTCD AEGNPTPTAK WDFNQGDLPK
1861 EAVFVNNNHT VVVNNVTKYH TGVYKCYATN KVGQAVKTIN VHVRTKPRFE SGLTESELTV
1921 NLTRSITLEC DVDDAIGVGI SWTVNGKPFL AETDGVQTLA GGRFLHIVSA KTDDHGSYAC
1981 TVTNEAGVAT KTFNLFVQVP PTIVNEGGEY TVIENNSLVL PCEVTGKPNP VVTWTKDGRP
2041 VGDLKSVQVL SEGQQFKIVH AEIAHKGSYI CMAKNDVGTA EISFDVDIIT RPMIQKGIKN
2101 IVTAIKGGAL PFKCPIDDDK NFKGQIIWLR NYQPIDLEAE DARITRLSND RRLTILNVTE
2161 NDEGQYSCRV KNDAGENSFD FKATVLVPPT IIMLDKDKNK TAVEHSTVTL SCPATGKPEP
2221 DITWFKDGEA IHIENIADII PNGELNGNQL KITRIKEGDA GKYTCEADNS AGSVEQDVNV
2281 NVITIPKIEK DGIPSDYESQ QNERVVISCP VYARPPAKIT WLKAGKPLQS DKFVKTSANG
2341 QKLYLFKLRE TDSSKYTCIA TNEAGTDKRD FKVSMLVAPS FDEPNIVRRI TVNSGNPSTL
2401 HCPAKGSPSP TITWLKDGNA IEPNDRYVFF DAGRQLQISK TEGSDQGRYT CIATNSVGSD
2461 DLENTLEVII PPVIDGERRE AVAVIEGFSS ELFCDSNSTG VDVEWQKDGL TINQDTLRGD
2521 SFIQIPSSGK KMSFLSARKS DSGRYTCIVR NPAGEARKLF DFAVNDPPSI SDELSSANIQ
2581 TIVPYYPVEI NCVVSGSPHP KVYWLFDDKP LEPDSAAYEL TNNGETLKIV RSQVEHAGTY
2641 TCEAQNNVGK ARKDFLVRVT APPHFEKERE EVVARVGDTM LLTCNAESSV PLSSVYWHAH
2701 DESVQNGVIT SKYAANEKTL NVTNIQLDDE GFYYCTAVNE AGITKKFFKL IVIETPYFLD
2761 QQKLYPIILG KRLTLDCSAT GTPPPTILFM KDGKRLNESD EVDIIGSTLV IDNPQKEVEG
2821 RYTCIAENKA GRSEKDMMVE VLLPPKLSKE WINVEVQAGD PLTLECPIED TSGVHITWSR
2881 QFGKDGQLDM RAQSSSDKSK LYIMQATPED ADSYSCIAVN DAGGAEAVFQ VTVNTPPKIF
2941 GDSFSTTEIV ADTTLEIPCR TEGIPPPEIS WFLDGKPILE MPGVTYKQGD LSLRIDNIKP
3001 NQEGRYTCVA ENKAGRAEQD TYVEISEPPR VVMASEVMRV VEGRQTTIRC EVFGNPEPVV
3061 NWLKDGEPYT SDLLQFSTKL SYLHLRETTL ADGGTYTCIA TNKAGESQTT TDVEVLVPPR
3121 IEDEERVLQG KEGNTYMVHC QVTGRPVPYV TWKRNGKEIE QFNPVLHIRN ATRADEGKYS
3181 CIASNEAGTA VADFLIDVFT KPTFETHETT FNIVEGESAK IECKIDGHPK PTISWLKGGR
3241 PFNMDNIILS PRGDTLMILK AQRFDGGLYT CVATNSYGDS EQDFKVNVYT KPYIDETIDQ
3301 TPKAVAGGEI ILKCPVLGNP TPTVTWKRGD DAVPNDSRHT IVNNYDLKIN SVTTEDAGQY
3361 SCIAVNEAGN LTTHYAAEVI GKPTFVRKGG NLYEVIENDT ITMDCGVTSR PLPSISWFRG
3421 DKPVYLYDRY SISPDGSHIT INKAKLSDGG KYICRASNEA GTSDIDLILK ILVPPKIDKS
3481 NIIGNPLAIV ARTIYLECPI SGIPQPDVIW TKNGMDINMT DSRVILAQNN ETFGIENVQV
3541 TDQGRYTCTA TNRGGKASHD FSLDVLSPPE FDIHGTQPTI KREGDTITLT CPIKLAEDIA
3601 DQVMDVSWTK DSRALDGDLT DNVDISDDGR KLTISQASLE NAGLYTCIAL NRAGEASLEF
3661 KVEILSPPVI DISRNDVQPQ VAVNQPTIMR CAVTGHPFPS IKWLKNGKEV TDDENIRIVE
3721 QGQVLQILRT DSDHAGKWSC VAENDAGVKE LEMVLDVFTP PVVSVKSDNP IKALGETITL
3781 FCNASGNPYP QLKWAKGGSL IFDSPDGARI SLKGARLDIP HLKKTDVGDY TCQALNAAGT
3841 SEASVSVDVL VPPEINRDGI DMSPRLPAQQ SLTLQCLAQG KPVPQMRWTL NGTALTHSTP
3901 GITVASDSTF IQINNVSLSD KGVYTCYAEN VAGSDNLMYN VDVVQAPVIS NGGTKQVIEG
3961 ELAVIECLVE GYPAPQVSWL RNGNRVETGV QGVRYVTDGR MLTIIEARSL DSGIYLCSAT
4021 NEAGSAQQAY TLEVLVSPKI ITSTPGVLTP SSGSKFSLPC AVRGYPDPII SWTLNGNDIK
4081 DGENGHTIGA DGTLHIEKAE ERHLIYECTA KNDAGADTLE FPVQTIVAPK ISTSGNRYIN
4141 GSEGTETVIK CEIESESSEF SWSKNGVPLL PSNNLIFSED YKLIKILSTR LSDQGEYSCT
4201 AANKAGNATQ KTNLNVGVAP KIMERPRTQV VHKGDQVTLW CEASGVPQPA ITWYKDNELL
4261 TNTGVDETAT TKKKSVIFSS ISPSQAGVYT CKAENWVAST EEDIDLIVMI PPEVVPERMN
4321 VSTNPRQTVF LSCNATGIPE PVISWMRDSN IAIQNNEKYQ ILGTTLAIRN VLPDDDGFYH
4381 CIAKSDAGQK IATRKLIVNK PSDRPAPIWV ECDEKGKPKK TEYMIDRGDT PDDNPQLLPW
4441 KDVEDSSLNG SIAYRCMPGP RSSRTVLLHA APQFIVKPKN TTAAIGAIVE LRCSAAGPPH
4501 PTITWAKDGK LIEDSKFEIA YSHLKVTLNS TSDSGEYTCM AQNSVGSSTV SAFINVDNNI
4561 LPTPKPSSNQ KNVAVITCYE RNQAYSRGLT WEYNGVPMPK NLAGIHFMNN GSLVILDTSS
4621 LKEGDLELYT CKVRNRRRHS IPHLTSAFEG VPEVKTIDKV EVNNGDSVVL DCEVTSDPLT
4681 THVVWTKNDQ KMLDDDAIYV LPNNSLVLLN VEKYDEGVYK CVASNSIGKA FDDTQLNVYG
4741 GSSRREAYKK ENEDASTTTI TTTSPTTTTT ETPLTTTIIP ALITLPAKQY PTDDYHEGSA
4801 NDDGFGPTTQ DSLFEFNPPL HPEISVVNTD CAGTINENGD CVDKDGKTHN LKILTGENHC
4861 PEGFAMNPHT RICEDLDECA FYQPCDFECI NYDGGFQCNC PLGYELAEEG CRDVNECESV
4921 RCEDGKACFN QLGGYECIDD PCPANYSLVD DRYCEPECEN CTSTPIQVHM LAIPSGLPIS
4981 HIATLTAYDK SGRVLNDTTY AISDTGAPLA RGRMTSGPFT IKAVKRGHAQ VWTNRVLAAG
5041 DHHKVRVRAH SDHATNELHA PKETNFLVLI NVGQYPF
//