LOCUS VGM69608.1 1203 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans C2H2-type domain-containing protein protein.
ACCESSION BX284606-3843
PROTEIN_ID VGM69608.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="sdc-1"
/locus_tag="CELE_F52E10.1"
/standard_name="F52E10.1b"
/note="Confirmed by transcript evidence"
/db_xref="GOA:A0A486WU44"
/db_xref="InterPro:IPR013087"
/db_xref="InterPro:IPR036236"
/db_xref="UniProtKB/TrEMBL:A0A486WU44"
/db_xref="WormBase:WBGene00004745"
intron_pos 25:2 (1/13)
intron_pos 103:1 (2/13)
intron_pos 182:0 (3/13)
intron_pos 280:2 (4/13)
intron_pos 391:0 (5/13)
intron_pos 452:0 (6/13)
intron_pos 531:2 (7/13)
intron_pos 660:1 (8/13)
intron_pos 705:0 (9/13)
intron_pos 726:0 (10/13)
intron_pos 806:0 (11/13)
intron_pos 1098:0 (12/13)
intron_pos 1142:1 (13/13)
BEGIN
1 MSDEEDIDES FEIEEDGISI TDARGNSLKA QQIAGKERNL DPEADDLEVV VNFYEAGDGT
61 FQLQLPKLTA VKPVDKVNDV LDFINFDKKV CDGIHSSIKL VSQRDQTGPA PFPKHKLTCA
121 HCDWSFDNVM KLVRHRGVHK NVGVYMCQVC LTLFGHTYNL FMHWRTSCSQ TSTTATDIEI
181 QLQKAETPYL HRNVLNVLGS LNRASQYYCT GGYVFLPSDW CITNKEIVME KDHMSSCHLC
241 HLPVPNKFLE AHGNVHRGRF RIDGRIYGDY FCHICGTVFI EQDNLFKHWR LHCEEVIAYT
301 PVDQYLSNTE LATLAWLVLQ TTISQADIEC LRVSSSLITE KLAKEHAERH GIANSMHKYY
361 HFPQEIWPLK TFVNLDLVND AIPISGENSF KIKDPKRPVH IMNLLATACP GFYATGKTFN
421 MICSTKKSES DTKKVYRVIL RYTTEGSVIQ SYDFTARSFP KLRVDSETPE GVFSHPLADF
481 NVESNEAIVC HKCDSKKLTI TFSTEVRLKY HLLRHSESRK DGYHCAICKI IVYNRSHEEH
541 WINDCIPLQK LYRDQKDREC FDAEFAAKCA SIIKKLRIRT LIRWKERANE DWVETKQTPD
601 RIGEDFAIKF QVGTTALKTL MAGLEEHYKN AQARHEAYKY SEENFLPPLS TPVVVCFHCG
661 TRCHYTLLHD HLDYCHYWPR NKRLVNEEFH KWKKNGCRNT WRVMKSVAEA MQIEVPFISE
721 EQYSKILDYH TYFCNDTRYK VQDSINNWND CSTIRDVDLS EKLSVAEIVQ KGEDSVMAPE
781 PDIIKNVYFP SARIITDNML LRMTEINLND VVQRDPITKE ELTGKFKEVQ DEQDAILFGD
841 YRAVLRSKGI MVNSISDFVA PPDELAKAKA SQESAGQESV DHRNRREREF IQQYMGKDLA
901 LEAAARENGR LVEVDEEAED YELTPKELNA RRLVERNRHR EMCKTRCEHG EYDYEKFKAR
961 QVPINPAKMK ERKYLTRVVH ESGPDDDVCP DEPENNIIAF SPKYENSLSD FRISAIGFRE
1021 KYLADDKKKR NGIPIRKMTE AQKGVALDYD TLMARHGGRP DVIMNPAGTV FVGGFVFDRK
1081 PTCQDNMQTV YVLRNGYAHR YRIYHCEDTN GIYKFVWPQE QSFDPDSLAK SARVRMVKQV
1141 KSPEHMIHHI EEIDESIGHN YRLNRKRRNS ETREHELIEL DTDDLNEPST SDGRYSFGHH
1201 GYR
//