LOCUS VGM69606.1 1447 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Fibronectin type-III domain-containing
protein protein.
ACCESSION BX284606-2674
PROTEIN_ID VGM69606.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="C34F6.10"
/locus_tag="CELE_C34F6.10"
/standard_name="C34F6.10c"
/note="Confirmed by transcript evidence"
/db_xref="GOA:A0A486WX36"
/db_xref="InterPro:IPR003961"
/db_xref="InterPro:IPR013783"
/db_xref="InterPro:IPR036116"
/db_xref="UniProtKB/TrEMBL:A0A486WX36"
/db_xref="WormBase:WBGene00007944"
intron_pos 34:2 (1/13)
intron_pos 161:1 (2/13)
intron_pos 199:0 (3/13)
intron_pos 463:0 (4/13)
intron_pos 499:0 (5/13)
intron_pos 821:2 (6/13)
intron_pos 871:0 (7/13)
intron_pos 917:0 (8/13)
intron_pos 1184:2 (9/13)
intron_pos 1210:2 (10/13)
intron_pos 1323:0 (11/13)
intron_pos 1379:0 (12/13)
intron_pos 1403:0 (13/13)
BEGIN
1 MATFACVSLP PQFITPPPST SNCTQHIDSD SGSSTGTSGG DMKTLETLDD GGSTSSHQTS
61 PEYPSPPPPS NSPPESMASL QAESPIEDED ARHEMTSTEG TSSTGTGSPQ EPKTWISQPG
121 YHPVPISGPL PRHPQSILFV HVNDGEILQL HQQGNNEVVG NLLGPGTVRM IGEPGMTNQP
181 LPIQLRHNQQ CHQFVDEEVP QLVGSQQLLN AIGGTPTQNG PGTSSSRGSG RGNHGGGRRN
241 YGNQRSLHTN NNESGQHSQN GHSGHRNVYS RGNYRGNKYN SRGRMDYHGK ARNDNPSYMA
301 NNVQELPELA VNTHGSIDSN VQVTASTTQD MVTLRQPTPV MTLPPPPQQR SLLGEPSGPP
361 MGEMQPIVHG IPSAQSVNFP PPGLPLLIPS VHEIPRQDLS VMPAMMNGSV QSTMMQDPMM
421 PGTSMGMNPQ MFGVPPPPPG MMILSTDAAF NNNKWIPYQT LGENERLLKV LSTLRPIRVA
481 NTLTTEMEFL YTPLKINDYR FEHGICLFGP IENSDVSYHA TVFDLSGIMI TTVILEVNKS
541 GDDIVSNLFR VQSLHPNTTY KINMKAVIID RGLHGQQTDD LCFRTAPGRP EPPTEVEILS
601 RGLHFIELVW KTAINNGAFI SHYHVYIHEN ELEDGRMMQT AEEKIQISNL IPQTCYKIRI
661 HSINALGESM EGYELDVWTK PNSPPLAPEN ISVFAQSHRS IRVSWDKNPN CTIWIEVYNC
721 ASGKGGYARE NFGGDQTVIG ELDPDTEYQM RVIARNEFGE GHSEYINMRT QKYRKSEHPS
781 RFRQYSDDHR KVNYDRSPST PFFVRFVDNC PEMAWKNFAS PQDEISFLVE GSTFEMPEKY
841 IQLYRGNSSS LIVLDSKMHY IRVINIFKKG QRSPPSERAV IPREYFKYRP EKITDVKISL
901 RSENCVLVKW QTLDIKSNKL PETSKIIYYV QRCDLTENQV LCAGEEDHCF FDNIPGETTI
961 SVQVRAAVSF HDALTHGDWS VLSHFTTPRG LPSPVINAKF NVKCSTLYWD CLDKSTDLQY
1021 TVHIRQLPTK RDLLKVTTKA KNIVLDSVQP GEKYSVTLIS LTTVGKSKQR TELEINVPAL
1081 KPSAPEDVAV SQVQIDRCTV SWTAAEGNGS PIIGYVVRMM LNGELFSEHF VTESENETNY
1141 RHVLKYLDPN TEYLINIAAK NSVGFSEKIE AVVKTVPLCP TIPKIWCDCE ATALKIHWDR
1201 VTSGNSMMYK LMKINKNAQQ VTLYEGENNT AKVKSLKENT KYVFKLRVSD RATGASTWSE
1261 SFSFSTTTAP PPPLKKSPST ALVSGHSYLY RIEWENCLPD SSQHYYRLQI ADATVKGAKW
1321 QLCYEGRNHF YELNTETYPG ALHVRVMCVR KHLEEELKGS PSPVGYIGNV PPTIESVKNE
1381 EIHQKSRLHL FTTDRAYAYS LLVLLIFLFL MILSFSEKAF EYITGMPIEK LSSGNAATSP
1441 PSSKPPQ
//