LOCUS VDJ66210.1 586 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Casc1_N domain-containing protein protein. ACCESSION BX284606-2025 PROTEIN_ID VDJ66210.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="K09E2.2" /locus_tag="CELE_K09E2.2" /standard_name="K09E2.2b" /note="Confirmed by transcript evidence" /db_xref="InterPro:IPR023247" /db_xref="UniProtKB/TrEMBL:A0A3P6PB36" /db_xref="WormBase:WBGene00019571" intron_pos 21:0 (1/12) intron_pos 68:0 (2/12) intron_pos 143:1 (3/12) intron_pos 185:1 (4/12) intron_pos 229:2 (5/12) intron_pos 255:0 (6/12) intron_pos 286:1 (7/12) intron_pos 330:1 (8/12) intron_pos 387:1 (9/12) intron_pos 442:0 (10/12) intron_pos 498:0 (11/12) intron_pos 539:0 (12/12) BEGIN 1 MEGLVETMKQ LKVKFENEQQ WNRYVEGDIL YDVTDEKSAN TVHSYVLDPE NNLSLEDTHK 61 YFDYIMKALT NSSVDSIDKT DSKWLQLVAQ NMNIFQDVKS KLLKRWTWLV FEQCGIESNK 121 NEIIFQLESL TLSFWRASSE RKGKIIFFPG IHIEIVPFLQ SIRVVQHFEQ HTTELHNVMK 181 KYPLEFLYQY VEPEEDPEPY DELVPDIFVE NKLVTKKKLR KKVVKKGLTN TIELALKSGE 241 KRKKKQAHLS QRTLLSRSPS LKRGEHIRFN LYSDVTPIWK KSATKERSTD GTEHKIDFGT 301 EAFLGPVYLI SSFESSKKTQ KYGSWTLTID VKLDERKLSG ESLLVSLKVP VEEVFLGSNE 361 PVVAFRDETS TDWKKGVFTT HTQFDQNTFI VTTRLSKMGY VSLFQHNDFH YPYKSWKILF 421 EQDKISLRLH TNVVELAFVI EGNYFYLDTL TGDEFSKLRN LHQKKMSLSE LIMKFEKHGV 481 HIVPNDDIIN KHRDTKKDLD LEIFTYRLIC LNQINCESCR MNSTVSMETV VLTVNGAPRN 541 ITTKSAGKYV VNFGEAGKKQ RIHENYVTPA TLFQFLMVTR PLIVTK //