LOCUS VDJ66191.1 586 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans SF4 helicase domain-containing protein protein. ACCESSION BX284606-1313 PROTEIN_ID VDJ66191.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="twnk-1" /locus_tag="CELE_F46G11.1" /standard_name="F46G11.1d" /note="Confirmed by transcript evidence" /db_xref="GOA:A0A3P6NIH1" /db_xref="InterPro:IPR007694" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A0A3P6NIH1" /db_xref="WormBase:WBGene00018514" intron_pos 55:2 (1/11) intron_pos 79:0 (2/11) intron_pos 172:2 (3/11) intron_pos 264:2 (4/11) intron_pos 289:0 (5/11) intron_pos 326:0 (6/11) intron_pos 371:0 (7/11) intron_pos 395:2 (8/11) intron_pos 440:0 (9/11) intron_pos 482:0 (10/11) intron_pos 553:0 (11/11) BEGIN 1 MDDYTILPSP DEAPFDHSDD EYFTGRRLRQ RKAPRTGRSV TASESMNQIA DFDFSSDAPS 61 PRLDASEAMS APPDPDIKRY WDSSLDITDL SGHDFTIFKQ LQGMLGIENI SFETLARFNV 121 RVQTDTYGQP AILFPRYRGM TSRLRIPMGL KLIRKVGDRM EKENYPLPDE TSVRQKFNGV 181 FGLHMATLSD RSVVITTNER DALAIYEATK ALVFALPHGE ILDPLVLPYL EEFDKIYLWF 241 PVQHVSYAKD WGSALNTLKC LLVKNEERPI ELVRNGDHRL IRNSLSNSVV RMRERGFRSM 301 TDLDMREGIR SDLLNSTNRV VGFGQWKRFA VLNKYLGGLR PGEMTVLTGG TGNGKTTFLC 361 EYSLDLFTQG VRTLFCSFEM PEKKILHWML VQYAGLPLHR VEYSNSINSW LDRFERSSSA 421 LTMLDSEEFM EKSINEIVRA IRIHVENSGI QHVVIDNLQF LINQGMMADE KSSGLDRFHL 481 QDRFVGYMRQ LATQNQIHIT MVVHPRKTDG DTEIDVQHFG GSARVTQEAD NVIAIQRKRD 541 DRDRSKFRKF LYILKNRYYG RRVESDQLEM VFNPSTYSHT VVEFPK //