LOCUS       VDJ66188.1               568 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans SF4 helicase domain-containing
            protein protein.
ACCESSION   BX284606-1311
PROTEIN_ID  VDJ66188.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="twnk-1"
                     /locus_tag="CELE_F46G11.1"
                     /standard_name="F46G11.1b"
                     /note="Confirmed by transcript evidence"
                     /db_xref="GOA:A0A3P6PCZ1"
                     /db_xref="InterPro:IPR007694"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="UniProtKB/TrEMBL:A0A3P6PCZ1"
                     /db_xref="WormBase:WBGene00018514"
     intron_pos      5:0 (1/12)
     intron_pos      37:2 (2/12)
     intron_pos      61:0 (3/12)
     intron_pos      154:2 (4/12)
     intron_pos      246:2 (5/12)
     intron_pos      271:0 (6/12)
     intron_pos      308:0 (7/12)
     intron_pos      353:0 (8/12)
     intron_pos      377:2 (9/12)
     intron_pos      422:0 (10/12)
     intron_pos      464:0 (11/12)
     intron_pos      535:0 (12/12)
BEGIN
        1 MEDELDSDLY DRVSYLNLMD KIDTRKKTSK VGKFRDDSDA PSPRLDASEA MSAPPDPDIK
       61 RYWDSSLDIT DLSGHDFTIF KQLQGMLGIE NISFETLARF NVRVQTDTYG QPAILFPRYR
      121 GMTSRLRIPM GLKLIRKVGD RMEKENYPLP DETSVRQKFN GVFGLHMATL SDRSVVITTN
      181 ERDALAIYEA TKALVFALPH GEILDPLVLP YLEEFDKIYL WFPVQHVSYA KDWGSALNTL
      241 KCLLVKNEER PIELVRNGDH RLIRNSLSNS VVRMRERGFR SMTDLDMREG IRSDLLNSTN
      301 RVVGFGQWKR FAVLNKYLGG LRPGEMTVLT GGTGNGKTTF LCEYSLDLFT QGVRTLFCSF
      361 EMPEKKILHW MLVQYAGLPL HRVEYSNSIN SWLDRFERSS SALTMLDSEE FMEKSINEIV
      421 RAIRIHVENS GIQHVVIDNL QFLINQGMMA DEKSSGLDRF HLQDRFVGYM RQLATQNQIH
      481 ITMVVHPRKT DGDTEIDVQH FGGSARVTQE ADNVIAIQRK RDDRDRSKFR KFLYILKNRY
      541 YGRRVESDQL EMVFNPSTYS HTVVEFPK
//