LOCUS VDJ62621.1 1266 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans SSD domain-containing protein protein.
ACCESSION BX284602-2832
PROTEIN_ID VDJ62621.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="ptc-1"
/locus_tag="CELE_ZK675.1"
/standard_name="ZK675.1b"
/note="Confirmed by transcript evidence"
/db_xref="GOA:A0A3P6N6C5"
/db_xref="InterPro:IPR000731"
/db_xref="InterPro:IPR003392"
/db_xref="UniProtKB/TrEMBL:A0A3P6N6C5"
/db_xref="WormBase:WBGene00004208"
intron_pos 105:2 (1/5)
intron_pos 346:1 (2/5)
intron_pos 811:2 (3/5)
intron_pos 1159:2 (4/5)
intron_pos 1197:0 (5/5)
BEGIN
1 MIFAVCCYGL QYVHIETDIV KLWVAQGGRL DEELNFLPNI KEAMRNVTGD SGPELPRENG
61 LGGGYQVLIQ TPEYEGQDAL AAGPLLKHVE IMKHIASFNV SVHGVDWSLS DICFKPAPPS
121 VAADSAASSL GDVIDKIVPC IWITPIDCFW EGSKALGPHP SLPKSSLGPL GMLLSSLSDG
181 DMIRWSDFDP IAVIDEIHRS FNLGSHYTFF ERAGVSHGYM DRPCIDPLDP ECPPMAKNYF
241 DVCPHIDRVR EIAKKYGTEL EEEKKKDSGY SFFDFLGRKK REAGDQPKMI HPAQPADSIP
301 TIEDAVPAQV PVSTAPIPTT TTLSPEEARA AEEKEKKQKA RELKDYCKSY RKSAFEWLKK
361 NKDKWPEVMS ENMYPQNVDY AAEMTGGCSG FASNVLNWPE DMILGNPRRA KKGGKLSGAD
421 ALQSVFLVAS PADVFLRFKQ KPGRNSMKTG LDMDAWNETA AEQVLQAWQR NFTKSLYNHK
481 ANVDEDGNER RTLHPLASTS IADMLEEFCQ FNYTIILAGY ALMLAYAIVT QARFDNCLPA
541 TESSMGLALA GVLVVTFASV AGLGLATWFG IEFNAATTQI VPFLTLGIGV DNMFMLLHNY
601 RDVVKLAGGH AEMAILMRET GMSILCTSIN NILSFLTGTL LPIPALRSFC AQSSILLTFN
661 FIAILTIYPA IISIDLRRKK AQRRDLVCCL YGDTREESYS MISKPKIQSK RIIGAPSEAS
721 IMQQFDGITQ AQMASSDDPA PWSLHSFIRY YYIPFISKPA SKVAIIVGCC ALLGASFIGM
781 RQSTLGLELG DVLPEHTAPA QFLRARDKYF SFYPMFAVIK GPNIDYAHQQ RQIDNYRQSI
841 GSSKYVIKNK NEEPSEKYWL GLMRDWLISI QRGFDEEVAK GSFNLTSGTV IGSNVSEDAR
901 LAHALMCSHG SLFGCAGRVG KIRLVDASGI INSDGFYNYL TAWFNVDHMM YYVSQASFFP
961 TPPKWELSKN HTENFIPAAE PLAYSQIPFY LTGLTDTAVI VDAIKDIRSV CERFTDQGLP
1021 NFPQGIAFTF WEQYLFLTGN LMQAISIITI SVFCVISVLL FNPWAALMVV CILGIMTCEL
1081 AGFMGLVGIK LNPVSAVTLI TAVGIGVEFT VHVVVSFLTA LGTRSQRTSS AVDRVFVPVI
1141 HGSFSTLLGI LMLGFSEFEF VVKYFFIVMT ALICIGIING LILLPVLLSW FGPRREISPT
1201 GGKTTLTLPP PLPKNANSSR SGGDDSDEDD EPSGLVMYSR QAPPTTRTSG GNRGTVGNNT
1261 RRLPAV
//