LOCUS VAY52637.1 1985 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans EF-hand domain-containing protein protein.
ACCESSION BX284606-591
PROTEIN_ID VAY52637.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="unc-2"
/locus_tag="CELE_T02C5.5"
/standard_name="T02C5.5q"
/note="Partially confirmed by transcript evidence"
/db_xref="GOA:A0A3B1E695"
/db_xref="InterPro:IPR002048"
/db_xref="InterPro:IPR002077"
/db_xref="InterPro:IPR005821"
/db_xref="InterPro:IPR014873"
/db_xref="InterPro:IPR027359"
/db_xref="InterPro:IPR031649"
/db_xref="UniProtKB/TrEMBL:A0A3B1E695"
/db_xref="WormBase:WBGene00006742"
intron_pos 9:2 (1/27)
intron_pos 42:0 (2/27)
intron_pos 148:2 (3/27)
intron_pos 191:1 (4/27)
intron_pos 282:1 (5/27)
intron_pos 346:2 (6/27)
intron_pos 376:2 (7/27)
intron_pos 452:1 (8/27)
intron_pos 471:2 (9/27)
intron_pos 514:1 (10/27)
intron_pos 657:0 (11/27)
intron_pos 697:1 (12/27)
intron_pos 768:1 (13/27)
intron_pos 864:0 (14/27)
intron_pos 899:2 (15/27)
intron_pos 935:0 (16/27)
intron_pos 1196:0 (17/27)
intron_pos 1413:2 (18/27)
intron_pos 1517:1 (19/27)
intron_pos 1547:0 (20/27)
intron_pos 1618:0 (21/27)
intron_pos 1651:2 (22/27)
intron_pos 1681:0 (23/27)
intron_pos 1721:1 (24/27)
intron_pos 1818:1 (25/27)
intron_pos 1868:1 (26/27)
intron_pos 1930:0 (27/27)
BEGIN
1 MLGIDQIARL AAEEARREQK AESGTFVRKT TLSSNAPVKE KGPSSLFIFA EDNIIRRNAK
61 AIIEWGPFEY FILLTIIGNC VVLSMEQHLP KNDKKALSEW LERTEPYFMG IFCLECVLKV
121 IAFGFALHKG SYLRSGWNIM DFIVVVSGVV TMLPFSPATQ TANQPVDSVD LRTLRAVRVL
181 RPLKLVSGIP SLQVVLKSIL CAMAPLLQIG LLVLFAIIIF AIIGLEFYSG AFHSACYNER
241 GEIENVSERP MPCTNKTSPM GVYNCDVKGT TCLQKWIGPN YGITSFDNIG FAMITVFQCI
301 TMEGWTTVMY YTNDSLGSTY NWAYFIPLIV LGSFFMLNLV LGVLSGEFAK ERERVENRRE
361 FLKLRRQQQI ERELNGYLEW ILTAEEVILK EDRTTEEEKA AIMEARRRAA NKKLKQASKQ
421 QSTETEEDFE EDEDEMEEEY VDEGGTVEDE FAERKKRGCC HSVGKFIKQL RIQIRIMVKT
481 QIFYWSVITL VFLNTCCVAS EHYGQPQWFT DFLKYAEFVF LGIFVVEMLL KLFAMGSRTY
541 FASKFNRFDC VVIVGSAAEV IWAEVYGGSF GISVMRALRL LRIFKLTSYW VSLRNLVRSL
601 MNSMRSIISL LFLLFLFILI FALLGMQLFG GRFNFPTMHP YTHFDTFPVA LITVFQILTG
661 EDWNEVMYLA IESQGGIYSG GWPYSIYFIV LVLFGNYTLL NVFLAIAVDN LANAQELTAA
721 EEADEKANEI EEESEELDEQ YQEGDHCTID MEGKTAGDMC AVARAMDDLD EECEEEESPF
781 GGPKPMVPYS SMFFLSPTNP FRVLIHSIVC TKYFEMMVMT VICLSSVSLA AEDPVDEENP
841 RNKVLQYMDY CFTGVFACEM LLKLIDQGIL LHPGSYCRDF WNILDGIVVT CALFAFGFAG
901 TEGSAGKNLN TIKSLRVLRV LRPLKTIKRI PKLKAVFDCV VNSLKNVFNI LIVYFLFQFI
961 FAVIAVQLFN GKFFFCTDKN RKFANTCHGQ FFVYDNQNDP PRVEQREWRL RPFNYDNTIN
1021 AMLTLFVVTT GEGWPGIRQN SMDTTFEDQG PSPFFRVEVA LFYVMFFIVF PFFFVNIFVA
1081 LIIITFQEQG EAELSEGDLD KNQKQCIDFA LNARPRSLFM PEDKNSTKYR IWRLVTSPPF
1141 EYFIMTMICC NTLILMMKYY NNPLFYEEIL RLFNTALTAV FTVESILKIL AFGVRNYFRD
1201 GWNRFDFVTV VGSITDALVT EFGGHFVSLG FLRLFRAARL IRLLQQGYTI RILLWTFVQS
1261 FKALPYVCLL IGMLFFIYAI VGMQVFGNIW LNAATEINRH NNFQSFFNAV ILLFRCATGE
1321 GWQDIMMAAV QGKDCARAGS AEINFEKGQT CGSNVSYAYF TSFVFLSSFL MLNLFVAVIM
1381 DNFDYLTRDS SILGPHHLDE FIRVWADYDP AATGRIHYSE MYEMLRIMAP PVGFGKKCPY
1441 RLAYKHLIRM NMPVAEDGTV HFTTTLFALI RESLSIKMRP VEEMDEADEE LRLTLKKIWP
1501 LKAKKNMVDL VVPPNHELCF QKLTVGKIYA GLLILENYRA RKSGTEVGGQ GLFGGGLRSL
1561 VAAAKAAESQ HSSHTPQPPE ETTPIIPQHA QQFSAAPTMS AQGSLQQMQG TSSGGGQRPY
1621 SLFNSFVDTI KSGKQDGDVT DVQYQSVDQQ HEKMNSTGRR LSDMFSKIRR GTSADHNPHQ
1681 TEHLLAQDNR SPSSPRYRSM ARASPPSPAE RYGHPPRYRT ESPPSSRSEY QMSIRDPIIR
1741 RNRYNTMEHS RSSHDPQYHQ DQQQQQQPHH QQHSQHLQHS HHKTYQNHNQ YSRSPIYSDD
1801 SSVAESYRRE REFRRYQDST PQDVSEDDDP MPTAVRARRL PLISTMPTHY ESAYQPSSYN
1861 QHLNDSYGLG TGYQRDYHTS HSHSHHPTSQ QQQHQPMYST SPLISPRSSH SYYTPRSSQY
1921 YEIPSPSPDI YPSYRGSASP RRYPTSTVVV APDREGSSAR VIQAQPGSIP LSDSETEDDP
1981 RWAIV
//