LOCUS USG65870.1 572 aa PRT BCT 16-JUN-2022
DEFINITION Brevibacillus sp. BB3-R1 DNA polymerase III subunit gamma/
tau protein.
ACCESSION CP098755-69
PROTEIN_ID USG65870.1
SOURCE Brevibacillus sp. BB3-R1
ORGANISM Brevibacillus sp. BB3-R1
Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae;
Brevibacillus.
REFERENCE 1 (bases 1 to 5627247)
AUTHORS Heo,J., Lee,D., Won,M., Han,B.-H., Hong,S.-B. and Kwon,S.-W.
TITLE Genome sequencing of Brevibacillus sp. BB3-R1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5627247)
AUTHORS Heo,J., Lee,D., Won,M., Han,B.-H., Hong,S.-B. and Kwon,S.-W.
TITLE Direct Submission
JOURNAL Submitted (09-JUN-2022) Agricultural Mircrobiology Division,
National Institute of Agricultural Sciences, 166
Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
South Korea
COMMENT Bacteria and source DNA available from KACC.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: MAY-2022
Assembly Method :: Microbial Assembly Application of
SMRTLink v. 10.1
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 811.0x
Sequencing Technology :: PacBio Sequel; Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 06/10/2022 13:07:44
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.1
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,522
CDSs (total) :: 5,372
Genes (coding) :: 5,285
CDSs (with protein) :: 5,285
Genes (RNA) :: 150
rRNAs :: 9, 10, 10 (5S, 16S, 23S)
complete rRNAs :: 9, 10, 10 (5S, 16S, 23S)
tRNAs :: 116
ncRNAs :: 5
Pseudo Genes (total) :: 87
CDSs (without protein) :: 87
Pseudo Genes (ambiguous residues) :: 0 of 87
Pseudo Genes (frameshifted) :: 28 of 87
Pseudo Genes (incomplete) :: 62 of 87
Pseudo Genes (internal stop) :: 15 of 87
Pseudo Genes (multiple problems) :: 18 of 87
CRISPR Arrays :: 2
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Brevibacillus sp. BB3-R1"
/mol_type="genomic DNA"
/strain="BB3-R1"
/isolation_source="Cow fecal"
/culture_collection="KACC:22663"
/db_xref="taxon:2950604"
/country="South Korea: Yuseong-gu, Daejeon-si"
/collection_date="2022-03-23"
/collected_by="Jun Heo, Daseul Lee"
/identified_by="Jun Heo"
protein /gene="dnaX"
/locus_tag="NDK47_00495"
/EC_number="2.7.7.7"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012683844.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology. GO_component:
GO:0009360 - DNA polymerase III complex [Evidence IEA];
GO_function: GO:0003677 - DNA binding [Evidence IEA];
GO_function: GO:0003887 - DNA-directed DNA polymerase
activity [Evidence IEA]; GO_function: GO:0005524 - ATP
binding [Evidence IEA]; GO_process: GO:0006260 - DNA
replication [Evidence IEA]"
/transl_table=11
BEGIN
1 MAYTALYRVY RPQTFQDVVG QEHVTVTLRN ALREQRLSHA YLFNGPRGTG KTSAAKIMAK
61 AVNCEQPQDG EPCNQCATCK AITDGSVTDV LEIDAASNRG VEEIRDIRDK VKFAPSDVKY
121 KVYIIDEVHM LTTEAFNALL KTLEEPPSHV IFILATTEPH KLPATIISRC QRFDFHRISL
181 REMVRRLSYI CESQQVSVEE QALTLVAKMA EGGMRDALSL LDQAISYSNE KITAADIMQI
241 TGTVSQGYFS TLARSVANRD VAQVMEQFDK VMVQGKDPEQ FLHDFLYYYR DMLLLKTAPH
301 LEEIVERTMI DDQFAQVAQL YEIPHLYSAI EVCNQSLAQL KWSTYARVLV ELTLVKLCQL
361 PGQSPQQGAT QSAAVSNTAS GEDLAGLANR IRQLEERLAQ LAQGQGLQSG QAQAEEPRKQ
421 EARRPVAAAG GGSRTPMNRV REAAMAVNEA LSRQVRGQWS QILADVKKVK IQYQAWLVNG
481 QPAAVGSDSV VVTFTSPIHC DKTMEPELKN VIERAILGVV GRPLQLLSVM EEEWQSVYQQ
541 AAQGDAQKQE EQDPFVAEAI KLVGEGLVEV KE
//