LOCUS UQS87330.1 625 aa PRT BCT 19-SEP-2022
DEFINITION Nicoliella spurrieriana CAP domain-containing protein protein.
ACCESSION CP093361-443
PROTEIN_ID UQS87330.1
SOURCE Nicoliella spurrieriana
ORGANISM Nicoliella spurrieriana
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae;
Nicoliella.
REFERENCE 1 (bases 1 to 1709727)
AUTHORS Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
and Jiranek,V.
TITLE Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
sp. nov., Bombilactobacillus folatiphilus sp. nov. and
Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
bacterial isolates from stingless bees Tetragonula carbonaria and
Austroplebeia australis
JOURNAL Int J Syst Evol Microbiol 72 (9) (2022)
PUBMED 36094463
REFERENCE 2 (bases 1 to 1709727)
AUTHORS Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
Jiranek,V.
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: NOV-2020
Assembly Method :: Smrtlink v. 9.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 6375x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 03/14/2022 11:59:34
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,728
CDSs (total) :: 1,646
Genes (coding) :: 1,628
CDSs (with protein) :: 1,628
Genes (RNA) :: 82
rRNAs :: 5, 5, 5 (5S, 16S, 23S)
complete rRNAs :: 5, 5, 5 (5S, 16S, 23S)
tRNAs :: 64
ncRNAs :: 3
Pseudo Genes (total) :: 18
CDSs (without protein) :: 18
Pseudo Genes (ambiguous residues) :: 0 of 18
Pseudo Genes (frameshifted) :: 8 of 18
Pseudo Genes (incomplete) :: 5 of 18
Pseudo Genes (internal stop) :: 8 of 18
Pseudo Genes (multiple problems) :: 3 of 18
CRISPR Arrays :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Nicoliella spurrieriana"
/mol_type="genomic DNA"
/strain="SGEP1_A5"
/isolation_source="Honey"
/host="Tetragonula carbonaria"
/type_material="type strain of Nicolia spurrieriana"
/db_xref="taxon:2925830"
/country="Australia: Brisbane"
/lat_lon="27.4810 S 153.0121 E"
/collection_date="2020-03-26"
protein /locus_tag="MOO44_04010"
/inference="COORDINATES: protein motif:HMM:NF012415.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MKFSKYLTVG LTAVLIGGWT ATATVSANTT TYQYKVNTVH YYSQLPNAKG KFKHVKKTVK
61 YDLKGVHVKV HKVKTVHHVK YAKVGSKWVQ FDQLTKVKAK AKAKQHSATP TGNNDATSNS
121 NDDSNTDNAS SSSSSDTSNH NLTSPLSASS NNNSSTINWN DTNNTQLAVQ AALTYLNQVR
181 TQAGLPAFQL NQKLAQVANL RASQLVSNFS HYDSNGNLAF ETTAKQLGYS GNQSPFGTWG
241 ENIYQGYVGD TDTPQTAGQQ GIKSFQSEGP ENNDGNEHGH YENDMSTSFN QVGIGFKYDP
301 ASQNTYLAVD FGVGNNNNTS SSTTPASANY STPNANNNGT QSSVTTPTPN TTTTQPSDDN
361 GGVKISHTIT ATDGNGNSTT INGNTFTVDA NGNPVSVGSN QSTSNADNSA NSTQSANNSN
421 NNQLNNMNNY SPFANNQGTS SDNQTATNAQ EASNDNQTSS NEQDPSSTIN WTSDSTRQAA
481 AQAAFNELNQ ARSKAGLPAL QWDPKLAKVA EMRSNDLIAD FNHRDSSGTI YAQKDAEQLG
541 YSWSDDPFGT WGENIAQGNP ADTIQAAGAQ GIDMFQSEGP DNGDGQEHGH YENDMSTEFN
601 AVGIGFSYDP NSGNTYLAVD FGYNG
//