LOCUS       UQS87004.1               609 aa    PRT              BCT 19-SEP-2022
DEFINITION  Nicoliella spurrieriana DNA polymerase III subunit gamma/
            tau protein.
ACCESSION   CP093361-97
PROTEIN_ID  UQS87004.1
SOURCE      Nicoliella spurrieriana
  ORGANISM  Nicoliella spurrieriana
            Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae;
            Nicoliella.
REFERENCE   1  (bases 1 to 1709727)
  AUTHORS   Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
            and Jiranek,V.
  TITLE     Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
            sp. nov., Bombilactobacillus folatiphilus sp. nov. and
            Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
            bacterial isolates from stingless bees Tetragonula carbonaria and
            Austroplebeia australis
  JOURNAL   Int J Syst Evol Microbiol 72 (9) (2022)
   PUBMED   36094463
REFERENCE   2  (bases 1 to 1709727)
  AUTHORS   Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
            Jiranek,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
            PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: NOV-2020
            Assembly Method        :: Smrtlink v. 9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 6375x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/14/2022 11:59:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.0
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,728
            CDSs (total)                      :: 1,646
            Genes (coding)                    :: 1,628
            CDSs (with protein)               :: 1,628
            Genes (RNA)                       :: 82
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 8 of 18
            Pseudo Genes (incomplete)         :: 5 of 18
            Pseudo Genes (internal stop)      :: 8 of 18
            Pseudo Genes (multiple problems)  :: 3 of 18
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Nicoliella spurrieriana"
                     /mol_type="genomic DNA"
                     /strain="SGEP1_A5"
                     /isolation_source="Honey"
                     /host="Tetragonula carbonaria"
                     /type_material="type strain of Nicolia spurrieriana"
                     /db_xref="taxon:2925830"
                     /country="Australia: Brisbane"
                     /lat_lon="27.4810 S 153.0121 E"
                     /collection_date="2020-03-26"
     protein         /gene="dnaX"
                     /locus_tag="MOO44_02185"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_component:
                     GO:0009360 - DNA polymerase III complex [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]; GO_function: GO:0005524 - ATP
                     binding [Evidence IEA]; GO_process: GO:0006260 - DNA
                     replication [Evidence IEA]"
                     /transl_table=11
BEGIN
        1 MSYQALYRVW RPQRFADLVG QPVITETLKN TIITNQISHA YLFAGPRGTG KTSAAKIFAK
       61 AVNCPNAKDG EPCNECSICK AITNGTLNDV IEIDAASNNG VDEIRDIRDK AKYAPTEATY
      121 KVYIIDEVHM LSTGAFNALL KTLEEPPTNV IFILATTEPH KLPATIISRT QRFDFKRIQP
      181 KDILERMEYI LKQKDVKYDD KALRVIARAA EGGMRDALSI LDQTMSYGDD VVTYENALQV
      241 TGSVTTSLLT EFVSEVAHQD VKAALVSVRK IVDAGKDANQ FIEDLISYYQ NTLLYKQAPE
      301 MVLEQELGIV DDQFKQIATD ANANVIYQII EILNDIQQQM RYTLHPDVYL EVLTVKIATL
      361 NRGGVEGSAA DSKQIEQLTG EINDLKQQLS ALKQSVITTD SKPQAQSTPK QSATPQPAPV
      421 KKQSAPSHRV NLEKIYPILD HATRSDLNRI KSSWAELVQN LDVVQRSLMN IANPVAASSS
      481 GVVLSFSYDI FYQKAVNDRS LIDAIGNGFD RIIGYAPDLS FVPEEQWQQI RKDYYNHKRM
      541 RGNANQPAPS AEQSSAPKQH SNAAGNDNSD EPPLPIDDQG VHEQASAEPD VVTKAEELFG
      601 KDILDVKND
//