LOCUS UQS86153.1 730 aa PRT BCT 19-SEP-2022
DEFINITION Nicoliella spurrieriana anaerobic ribonucleoside-triphosphate
reductase protein.
ACCESSION CP093360-95
PROTEIN_ID UQS86153.1
SOURCE Nicoliella spurrieriana
ORGANISM Nicoliella spurrieriana
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae;
Nicoliella.
REFERENCE 1 (bases 1 to 343860)
AUTHORS Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
and Jiranek,V.
TITLE Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
sp. nov., Bombilactobacillus folatiphilus sp. nov. and
Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
bacterial isolates from stingless bees Tetragonula carbonaria and
Austroplebeia australis
JOURNAL Int J Syst Evol Microbiol 72 (9) (2022)
PUBMED 36094463
REFERENCE 2 (bases 1 to 343860)
AUTHORS Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
Jiranek,V.
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: NOV-2020
Assembly Method :: Smrtlink v. 9.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 6375x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 03/14/2022 11:59:34
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,728
CDSs (total) :: 1,646
Genes (coding) :: 1,628
CDSs (with protein) :: 1,628
Genes (RNA) :: 82
rRNAs :: 5, 5, 5 (5S, 16S, 23S)
complete rRNAs :: 5, 5, 5 (5S, 16S, 23S)
tRNAs :: 64
ncRNAs :: 3
Pseudo Genes (total) :: 18
CDSs (without protein) :: 18
Pseudo Genes (ambiguous residues) :: 0 of 18
Pseudo Genes (frameshifted) :: 8 of 18
Pseudo Genes (incomplete) :: 5 of 18
Pseudo Genes (internal stop) :: 8 of 18
Pseudo Genes (multiple problems) :: 3 of 18
CRISPR Arrays :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Nicoliella spurrieriana"
/mol_type="genomic DNA"
/strain="SGEP1_A5"
/isolation_source="Honey"
/host="Tetragonula carbonaria"
/type_material="type strain of Nicolia spurrieriana"
/db_xref="taxon:2925830"
/plasmid="p1unnamed"
/country="Australia: Brisbane"
/lat_lon="27.4810 S 153.0121 E"
/collection_date="2020-03-26"
protein /gene="nrdD"
/locus_tag="MOO44_00475"
/EC_number="1.17.4.2"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010019189.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology. GO_function:
GO:0008998 - ribonucleoside-triphosphate reductase
activity [Evidence IEA]; GO_process: GO:0006260 - DNA
replication [Evidence IEA]"
/transl_table=11
BEGIN
1 MHSKNLNQIT IIKNSGDKTP FFRYKLDYLF GQLSLNADLQ NQFYQELFKH VNNQNELKSS
61 VIRETFNNIM NNNHLIDAQR KYQSYYEQDQ LMWEKSIDID RNIKKLFNKN SRVIHENANK
121 DSNVFNTQRD LQAGRSSKAI GLRMLPPLVA KAHLRGDIHW HDLDYSPATP ETNCCLVDFK
181 TMLNHGFKIG NAKVASPKSI QTATAQVAQI IANVASLQYG GISFDRADEV LAPFAKLNYQ
241 KHIREAQKWV TPEKHAEYAR ERTQKDIYDA MQALEYEINT LYSSQGQTPF TTVSFGLGTN
301 WFEREIQKDI FRIRIKGLGV EKRTAIFPKL TFALKRGLNL NPGDPNYDIK QLAVDCSTKR
361 MYPDILNYDK LTEITGNFKA PMGCRSFLPK WVDDDGNEVN AGRMNLGVVT VNLPRIALYA
421 NGDQEQFWTI FKDKMRIVHQ ALAYRIKRCT EAKPANAPLL YKYGAFGKQL SDDDSVDELF
481 NHERATVSVG YIGLYEVGAS FFGPDWERNQ QAHLFTVEIV KQLNLLCQKW SKQSGYHYSL
541 YSTPAESLTD TFCQDDIKKF GKVAAITDKE YYTNSFHYDV RKSPTPFDKL TFEEAYPHYA
601 SAGFIHYCEY PNLKQNPKAL EAVWDWAYDH VGYLGTNTSI DQCFKCGFRG DFNATARGFV
661 CPQCGNHDPK YCDVVKRTCG YLGNPQARPM VHGRHQEISA RVKNMTGGMI RNAAEHEKAK
721 QSDSQRMARE
//