LOCUS UQS85867.1 581 aa PRT BCT 19-SEP-2022
DEFINITION Apilactobacillus apisilvae hypothetical protein protein.
ACCESSION CP093364-22
PROTEIN_ID UQS85867.1
SOURCE Apilactobacillus apisilvae
ORGANISM Apilactobacillus apisilvae
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
Apilactobacillus.
REFERENCE 1 (bases 1 to 38616)
AUTHORS Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
and Jiranek,V.
TITLE Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
sp. nov., Bombilactobacillus folatiphilus sp. nov. and
Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
bacterial isolates from stingless bees Tetragonula carbonaria and
Austroplebeia australis
JOURNAL Int J Syst Evol Microbiol 72 (9) (2022)
PUBMED 36094463
REFERENCE 2 (bases 1 to 38616)
AUTHORS Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
Jiranek,V.
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: NOV-2020
Assembly Method :: Smrtlink v. 9.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 11482x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 03/14/2022 11:52:50
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,575
CDSs (total) :: 1,494
Genes (coding) :: 1,480
CDSs (with protein) :: 1,480
Genes (RNA) :: 81
rRNAs :: 5, 5, 5 (5S, 16S, 23S)
complete rRNAs :: 5, 5, 5 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 3
Pseudo Genes (total) :: 14
CDSs (without protein) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 11 of 14
Pseudo Genes (internal stop) :: 1 of 14
Pseudo Genes (multiple problems) :: 3 of 14
CRISPR Arrays :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Apilactobacillus apisilvae"
/mol_type="genomic DNA"
/strain="SG5_A10"
/isolation_source="Bee"
/host="Austroplebeia australis"
/type_material="type strain of Apilactobacillus apisilvae"
/db_xref="taxon:2923364"
/plasmid="p2unnamed"
/country="Australia: Brisbane"
/lat_lon="27.4810 S 153.0121 E"
/collection_date="2020-04-30"
protein /locus_tag="MOO46_07715"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/transl_table=11
BEGIN
1 MPAIAVMGGM IVGLGLLAAV VAIGGSAMIT GSVGFIIFGA AVALVGAGVW LATEGTAALD
61 SQLPNLANNG LAGAGALVVL GAALLAFSVF ALVSAVGLAV LGVGLVVLGA GALVAGAGVL
121 VLAAAGMVLA AALVGVGGGL MVAAAGIQAM KSAISGDFGG AKDAIESTKD SVSGLKDTIG
181 NIGKGAMNGV DFSSMFGGIT ASADSTKNHV DQTKMSPQMD LSKVNNQMNG LGNKKFDSPK
241 MKPMQLPNSQ NVFEQLNKSS QNNSVPVQVK PKADTGNQDW MSNIKSQIGN QQLPGMKMGK
301 IKMDGSNQDV MSSLQSQMSN KTMTPPKVGT PKVPNPKMPT KLGTIAAPKV ARPTVPQPKL
361 PHLVTIPAPK VHNPNMSPLV QAVQSGMQKA VGTVRNASSS MYSAGAYVGQ GLASGIRSQI
421 GNVASAANSL IAQADRAARA KAKIHSPSRL FAEIGDYLGQ GMANGMNGTQ NLISDASGNM
481 NDAAQGGIND LDVNANVNSK KNNTPSDFFG YGMSGNADNS SHYQNNSVNN QSSSHDQSKN
541 LNFAKGAIQI INNEKGKSAE DLLAEIEDLI IKQNEGGLAN G
//