LOCUS UQS85747.1 814 aa PRT BCT 19-SEP-2022 DEFINITION Apilactobacillus apisilvae DNA gyrase subunit A protein. ACCESSION CP093362-1026 PROTEIN_ID UQS85747.1 SOURCE Apilactobacillus apisilvae ORGANISM Apilactobacillus apisilvae Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Apilactobacillus. REFERENCE 1 (bases 1 to 1469670) AUTHORS Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S. and Jiranek,V. TITLE Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov. sp. nov., Bombilactobacillus folatiphilus sp. nov. and Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid bacterial isolates from stingless bees Tetragonula carbonaria and Austroplebeia australis JOURNAL Int J Syst Evol Microbiol 72 (9) (2022) PUBMED 36094463 REFERENCE 2 (bases 1 to 1469670) AUTHORS Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and Jiranek,V. TITLE Direct Submission JOURNAL Submitted (11-MAR-2022) Wine Science, The University of Adelaide, PMB 1, Glen Osmond, South Australia 5064, Australia COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: NOV-2020 Assembly Method :: Smrtlink v. 9.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 11482x Sequencing Technology :: PacBio Sequel II ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 03/14/2022 11:52:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 1,575 CDSs (total) :: 1,494 Genes (coding) :: 1,480 CDSs (with protein) :: 1,480 Genes (RNA) :: 81 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 63 ncRNAs :: 3 Pseudo Genes (total) :: 14 CDSs (without protein) :: 14 Pseudo Genes (ambiguous residues) :: 0 of 14 Pseudo Genes (frameshifted) :: 5 of 14 Pseudo Genes (incomplete) :: 11 of 14 Pseudo Genes (internal stop) :: 1 of 14 Pseudo Genes (multiple problems) :: 3 of 14 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Apilactobacillus apisilvae" /mol_type="genomic DNA" /strain="SG5_A10" /isolation_source="Bee" /host="Austroplebeia australis" /type_material="type strain of Apilactobacillus apisilvae" /db_xref="taxon:2923364" /country="Australia: Brisbane" /lat_lon="27.4810 S 153.0121 E" /collection_date="2020-04-30" protein /gene="gyrA" /locus_tag="MOO46_05440" /EC_number="5.6.2.2" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_008213425.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology. GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO_function: GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_process: GO:0006259 - DNA metabolic process [Evidence IEA]; GO_process: GO:0006265 - DNA topological change [Evidence IEA]" /transl_table=11 BEGIN 1 MKTSFLDYAM SVIVARALPD VRDGMKPVHR RILYDMRELG LTPEKPFRKS ARVVGDTLGK 61 YHPHGDTAVY GSMVRMAQDF SYRYPLVNGH GNFGSVDGDG AAAMRYTEAK LSKIGMEMLR 121 DINKDTVDFQ DNFDGSEREP EVLPSRFPNL LVNGASGIAV GMATNIPPHN LSEVISALHI 181 LMQNPDATTA DLMEAVPGPD FPTGGVVLGK SGIRKAYETG KGSIILRAKT DIEENKNGKQ 241 RIIATEIPYM TNKAKLIERI ADLVRDKRIE GITDVNDESD REGMRIVIDV KRDASAQVVL 301 NNLYKMTLMQ TSFSFNMLAI VDGTPRILSL KEILQYYLEH QVSVIKRRTQ YELKKAENRA 361 HILAGLIKAL DNIDRVITII RESQTSAVAK KQLMDEFDLS DKQSQAILDM RLVRLTGLER 421 GKIESEHDEL LKNINEYKEI LASREKINDI IYDELMEIQR KFGDDRKTEL RVGEVLSIED 481 EDLIAEEDIM ITLTHNGYIK RTATSEFKSQ NRGGRGVQGM GVHDDDFIEH LVSTTTHHTL 541 LFFTNQGKVY RMKGYEIPEY GRSAKGLPII NLLGIENAEK VQAVITISEN ENYDDKDLFF 601 TTVQGTVKRT SVDEFKNIRS NGLKAIHLKD KDELMRVSTV TENQNMVIGT HLGYCVSFKV 661 ADVRSMGRSA TGVRGIRLRD HDYVVGADVL NPDDKVFVIS EKGYGKQTPA SEYQIKGRGG 721 KGIKTMNVTE KNGPLAGLTT VTGDEDIMLV TDKGVMIRFN VADVSQTGRA TLGVHLIRID 781 EDSRVSTVAK VSNEAEESDD EKDDSNSDEE TTNE //