LOCUS       UQS85747.1               814 aa    PRT              BCT 19-SEP-2022
DEFINITION  Apilactobacillus apisilvae DNA gyrase subunit A protein.
ACCESSION   CP093362-1026
PROTEIN_ID  UQS85747.1
SOURCE      Apilactobacillus apisilvae
  ORGANISM  Apilactobacillus apisilvae
            Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
            Apilactobacillus.
REFERENCE   1  (bases 1 to 1469670)
  AUTHORS   Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
            and Jiranek,V.
  TITLE     Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
            sp. nov., Bombilactobacillus folatiphilus sp. nov. and
            Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
            bacterial isolates from stingless bees Tetragonula carbonaria and
            Austroplebeia australis
  JOURNAL   Int J Syst Evol Microbiol 72 (9) (2022)
   PUBMED   36094463
REFERENCE   2  (bases 1 to 1469670)
  AUTHORS   Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
            Jiranek,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
            PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: NOV-2020
            Assembly Method        :: Smrtlink v. 9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 11482x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/14/2022 11:52:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.0
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,575
            CDSs (total)                      :: 1,494
            Genes (coding)                    :: 1,480
            CDSs (with protein)               :: 1,480
            Genes (RNA)                       :: 81
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 5 of 14
            Pseudo Genes (incomplete)         :: 11 of 14
            Pseudo Genes (internal stop)      :: 1 of 14
            Pseudo Genes (multiple problems)  :: 3 of 14
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Apilactobacillus apisilvae"
                     /mol_type="genomic DNA"
                     /strain="SG5_A10"
                     /isolation_source="Bee"
                     /host="Austroplebeia australis"
                     /type_material="type strain of Apilactobacillus apisilvae"
                     /db_xref="taxon:2923364"
                     /country="Australia: Brisbane"
                     /lat_lon="27.4810 S 153.0121 E"
                     /collection_date="2020-04-30"
     protein         /gene="gyrA"
                     /locus_tag="MOO46_05440"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008213425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0003677 - DNA binding [Evidence IEA]; GO_function:
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA]; GO_function: GO:0005524 - ATP binding [Evidence
                     IEA]; GO_process: GO:0006259 - DNA metabolic process
                     [Evidence IEA]; GO_process: GO:0006265 - DNA topological
                     change [Evidence IEA]"
                     /transl_table=11
BEGIN
        1 MKTSFLDYAM SVIVARALPD VRDGMKPVHR RILYDMRELG LTPEKPFRKS ARVVGDTLGK
       61 YHPHGDTAVY GSMVRMAQDF SYRYPLVNGH GNFGSVDGDG AAAMRYTEAK LSKIGMEMLR
      121 DINKDTVDFQ DNFDGSEREP EVLPSRFPNL LVNGASGIAV GMATNIPPHN LSEVISALHI
      181 LMQNPDATTA DLMEAVPGPD FPTGGVVLGK SGIRKAYETG KGSIILRAKT DIEENKNGKQ
      241 RIIATEIPYM TNKAKLIERI ADLVRDKRIE GITDVNDESD REGMRIVIDV KRDASAQVVL
      301 NNLYKMTLMQ TSFSFNMLAI VDGTPRILSL KEILQYYLEH QVSVIKRRTQ YELKKAENRA
      361 HILAGLIKAL DNIDRVITII RESQTSAVAK KQLMDEFDLS DKQSQAILDM RLVRLTGLER
      421 GKIESEHDEL LKNINEYKEI LASREKINDI IYDELMEIQR KFGDDRKTEL RVGEVLSIED
      481 EDLIAEEDIM ITLTHNGYIK RTATSEFKSQ NRGGRGVQGM GVHDDDFIEH LVSTTTHHTL
      541 LFFTNQGKVY RMKGYEIPEY GRSAKGLPII NLLGIENAEK VQAVITISEN ENYDDKDLFF
      601 TTVQGTVKRT SVDEFKNIRS NGLKAIHLKD KDELMRVSTV TENQNMVIGT HLGYCVSFKV
      661 ADVRSMGRSA TGVRGIRLRD HDYVVGADVL NPDDKVFVIS EKGYGKQTPA SEYQIKGRGG
      721 KGIKTMNVTE KNGPLAGLTT VTGDEDIMLV TDKGVMIRFN VADVSQTGRA TLGVHLIRID
      781 EDSRVSTVAK VSNEAEESDD EKDDSNSDEE TTNE
//