LOCUS       UQS85711.1               805 aa    PRT              BCT 19-SEP-2022
DEFINITION  Apilactobacillus apisilvae DNA topoisomerase IV subunit A protein.
ACCESSION   CP093362-397
PROTEIN_ID  UQS85711.1
SOURCE      Apilactobacillus apisilvae
  ORGANISM  Apilactobacillus apisilvae
            Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
            Apilactobacillus.
REFERENCE   1  (bases 1 to 1469670)
  AUTHORS   Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
            and Jiranek,V.
  TITLE     Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
            sp. nov., Bombilactobacillus folatiphilus sp. nov. and
            Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
            bacterial isolates from stingless bees Tetragonula carbonaria and
            Austroplebeia australis
  JOURNAL   Int J Syst Evol Microbiol 72 (9) (2022)
   PUBMED   36094463
REFERENCE   2  (bases 1 to 1469670)
  AUTHORS   Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
            Jiranek,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
            PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: NOV-2020
            Assembly Method        :: Smrtlink v. 9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 11482x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/14/2022 11:52:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.0
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,575
            CDSs (total)                      :: 1,494
            Genes (coding)                    :: 1,480
            CDSs (with protein)               :: 1,480
            Genes (RNA)                       :: 81
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 5 of 14
            Pseudo Genes (incomplete)         :: 11 of 14
            Pseudo Genes (internal stop)      :: 1 of 14
            Pseudo Genes (multiple problems)  :: 3 of 14
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Apilactobacillus apisilvae"
                     /mol_type="genomic DNA"
                     /strain="SG5_A10"
                     /isolation_source="Bee"
                     /host="Austroplebeia australis"
                     /type_material="type strain of Apilactobacillus apisilvae"
                     /db_xref="taxon:2923364"
                     /country="Australia: Brisbane"
                     /lat_lon="27.4810 S 153.0121 E"
                     /collection_date="2020-04-30"
     protein         /gene="parC"
                     /locus_tag="MOO46_02095"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020088634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_component:
                     GO:0009340 - DNA topoisomerase IV complex [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA]; GO_process: GO:0006260 - DNA replication [Evidence
                     IEA]; GO_process: GO:0006265 - DNA topological change
                     [Evidence IEA]"
                     /transl_table=11
BEGIN
        1 MSERFSRYSK SIIQERALPD IRDGLKPVQR RILYAMNKDG NTYDKGFRKS AKSVGNVMGN
       61 YHPHGDSSIY EALVRMSQDW KLREPLIEMH GNNGSMDGDP AAAMRYTEAR LSKIASEMIR
      121 DIDKDTVDWV PNFDDTEQEP TVLPSRFPNL LVNGATGISA GYATEIPPHN LSEVIDALIY
      181 LQKKPDADLD ELMKFIKGPD FPVGGIIQGL DGIKKAYKTG RGKIVIRSKT STENLRGNKS
      241 LIRVTEVPYD VNKLQMVKQI DEIRISKKID GIAEVRDESD RNGLSIAIEL KKDVDVKGIL
      301 NYLFKNTDLQ VNYHFNVVAI NNMRPERLPL KTILKSYLEY QRAVITKRTK FELDNVMNRQ
      361 HIVNGLIKAL SILNKVIKTI RASKNRKDAC RNLVKEYEFS NKQADAIVKL QLYRLTNTDV
      421 TELEAENDKL SQNIIKYNNI LNDDKVLNNV LTKEFKQIQK DYGNSRRTKI ENQVQELKIS
      481 KNITVPDEDV VVLVSHDGYL KRSSVRSYKA SDVNENGLKE DDYPIFTAEM STLDHIFMFT
      541 NKGHLIYRPV HEISDAKWKE TGEHISQTIG LDDDEQIIKI FTFKSLKENG CFLIATNDGY
      601 IKQTEFSKLL PGRTYRSHAP VYEKLKTSDA RVVNIKYINN NNKENKVVLM SNIGLATKFE
      661 LSEVSINGAK TTGVKSMDLH DDEYVANCQL INDSDDVAII TQRGFYKNMS VEDIPLASRG
      721 RRGVQVLKPL KKNAHKIMDF IRLIPNENDF KPIRIFTDRH RYHDIIPSDH PINDRQSNGS
      781 ALIDTSSEGK PLKMKVINAE LLSDK
//