LOCUS UQS85592.1 455 aa PRT BCT 19-SEP-2022
DEFINITION Apilactobacillus apisilvae 23S rRNA (uracil(1939)-C(5)
)-methyltransferase RlmD protein.
ACCESSION CP093362-604
PROTEIN_ID UQS85592.1
SOURCE Apilactobacillus apisilvae
ORGANISM Apilactobacillus apisilvae
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
Apilactobacillus.
REFERENCE 1 (bases 1 to 1469670)
AUTHORS Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
and Jiranek,V.
TITLE Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
sp. nov., Bombilactobacillus folatiphilus sp. nov. and
Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
bacterial isolates from stingless bees Tetragonula carbonaria and
Austroplebeia australis
JOURNAL Int J Syst Evol Microbiol 72 (9) (2022)
PUBMED 36094463
REFERENCE 2 (bases 1 to 1469670)
AUTHORS Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
Jiranek,V.
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: NOV-2020
Assembly Method :: Smrtlink v. 9.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 11482x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 03/14/2022 11:52:50
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,575
CDSs (total) :: 1,494
Genes (coding) :: 1,480
CDSs (with protein) :: 1,480
Genes (RNA) :: 81
rRNAs :: 5, 5, 5 (5S, 16S, 23S)
complete rRNAs :: 5, 5, 5 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 3
Pseudo Genes (total) :: 14
CDSs (without protein) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 11 of 14
Pseudo Genes (internal stop) :: 1 of 14
Pseudo Genes (multiple problems) :: 3 of 14
CRISPR Arrays :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Apilactobacillus apisilvae"
/mol_type="genomic DNA"
/strain="SG5_A10"
/isolation_source="Bee"
/host="Austroplebeia australis"
/type_material="type strain of Apilactobacillus apisilvae"
/db_xref="taxon:2923364"
/country="Australia: Brisbane"
/lat_lon="27.4810 S 153.0121 E"
/collection_date="2020-04-30"
protein /gene="rlmD"
/locus_tag="MOO46_03270"
/EC_number="2.1.1.190"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_020089548.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology. GO_function:
GO:0008649 - rRNA methyltransferase activity [Evidence
IEA]"
/transl_table=11
BEGIN
1 MKNKAPVEKN ETYDVNIIDL TYQGMGLAKI NDFSIFIENT LPGEEATIKV IKVNKNFGFG
61 KLIKLIKSSK YRVESVDKDY TRTGIAPLQH LKYDAQLQFK QNQIQQLFDK AKMGIKVLPT
121 IGMETPNHYR NKAQIPVKKI NGQLETGFYR QHSHDLVPIE DFYIQDPEID KAIVVVRDIL
181 RKYHVSPYDE VNHSGVIRNI MVRRGHYSHQ IMIGLITRTK KLPMVDMITK EISQSLPEVK
241 SIMQNINLTD GNALMGKKTI CLYGSSHIED NLLGLKFYIS LTSFYQVNPI QTEKLYSLAV
301 EKANLDGTQN VIDAYCGIGT ISLAMAKKAK MVYGVEIVKE AIEDAKINAQ KNHINNAKFV
361 TGKAEDQMEK WQSQGLKPDV IVVDPPRKGL ASSFIDSAAK FAPKRIVYVS CNPSTLVRDA
421 RRLADYGYEI SEPVQPVDQF PQTVHIESVT VFEKK
//