LOCUS UQS85550.1 717 aa PRT BCT 19-SEP-2022
DEFINITION Apilactobacillus apisilvae penicillin-binding protein protein.
ACCESSION CP093362-559
PROTEIN_ID UQS85550.1
SOURCE Apilactobacillus apisilvae
ORGANISM Apilactobacillus apisilvae
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
Apilactobacillus.
REFERENCE 1 (bases 1 to 1469670)
AUTHORS Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
and Jiranek,V.
TITLE Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
sp. nov., Bombilactobacillus folatiphilus sp. nov. and
Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
bacterial isolates from stingless bees Tetragonula carbonaria and
Austroplebeia australis
JOURNAL Int J Syst Evol Microbiol 72 (9) (2022)
PUBMED 36094463
REFERENCE 2 (bases 1 to 1469670)
AUTHORS Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
Jiranek,V.
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: NOV-2020
Assembly Method :: Smrtlink v. 9.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 11482x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 03/14/2022 11:52:50
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,575
CDSs (total) :: 1,494
Genes (coding) :: 1,480
CDSs (with protein) :: 1,480
Genes (RNA) :: 81
rRNAs :: 5, 5, 5 (5S, 16S, 23S)
complete rRNAs :: 5, 5, 5 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 3
Pseudo Genes (total) :: 14
CDSs (without protein) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 11 of 14
Pseudo Genes (internal stop) :: 1 of 14
Pseudo Genes (multiple problems) :: 3 of 14
CRISPR Arrays :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Apilactobacillus apisilvae"
/mol_type="genomic DNA"
/strain="SG5_A10"
/isolation_source="Bee"
/host="Austroplebeia australis"
/type_material="type strain of Apilactobacillus apisilvae"
/db_xref="taxon:2923364"
/country="Australia: Brisbane"
/lat_lon="27.4810 S 153.0121 E"
/collection_date="2020-04-30"
protein /locus_tag="MOO46_02910"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_003561541.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MSNKLNSNPK LKKRQKNRSH VGQLLLLLCM GVFLCIGLRF SYISVFKHVQ GVNLSQLAHN
61 LYTQNKVIPS KRGTIYDANG QPLAEDTSKY TLYAVLNKNY LDINHKPMYV TNKKKVARAI
121 SDVLPISYKQ ALKNLSPKNN AFQVEFGSAG SNISLITRKK LENKHVSGLG FTQQPSRIYP
181 NGEFASHIIG YASPLNTKNG SSQLVGQMGI EQIYNKLLTG TDGYSEEQKD STGVEIPNKN
241 NKSKKVKNGD DVYTTLDYRL QSLLETEMTN VYNQAHPSTM NAVLANAKTG DILAATQRPT
301 FNATTKQGLD KIWRNTLVQD SYEPGSTMKI FTVASSINSG HYNGNATYTS GQYFIDGRVV
361 PDWNPAGWGT ISYNKGFALS SNVAMAHLEQ NMGPKTWRQY MNRFQFFKPS NTGFSGEENG
421 SVQFQYPIEQ ANTAFGQGIQ VNALQMVRAL TSIANDGKML QPRFVSKIVN PKNKKLIQEL
481 PPKIVGNPIT SETSKKVIKH MEDVVYQPYG IGADYKIPGY KIAAKTGTAQ VSDGKSGYAS
541 GDDSYLYSVA GIAPANNPKY ILYLTMKQPK LPAGKTASQL MAQIFNPVMR LALEENVNAN
601 NSNDVEVPKI VNDSIDDAKN KMKKSKVKYI VIGNGNKVMD QSIDPYEKVT KDRLVILQTD
661 GDKKLANFKG WSRYDVATYC RMAGISVDLQ GDGYAYQQSI LPNSPIYDMS KLSVKFK
//