LOCUS UQS85548.1 460 aa PRT BCT 19-SEP-2022
DEFINITION Apilactobacillus apisilvae UDP-N-acetylmuramoyl-L-alanine-
-D-glutamate ligase protein.
ACCESSION CP093362-557
PROTEIN_ID UQS85548.1
SOURCE Apilactobacillus apisilvae
ORGANISM Apilactobacillus apisilvae
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
Apilactobacillus.
REFERENCE 1 (bases 1 to 1469670)
AUTHORS Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
and Jiranek,V.
TITLE Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
sp. nov., Bombilactobacillus folatiphilus sp. nov. and
Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
bacterial isolates from stingless bees Tetragonula carbonaria and
Austroplebeia australis
JOURNAL Int J Syst Evol Microbiol 72 (9) (2022)
PUBMED 36094463
REFERENCE 2 (bases 1 to 1469670)
AUTHORS Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
Jiranek,V.
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: NOV-2020
Assembly Method :: Smrtlink v. 9.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 11482x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 03/14/2022 11:52:50
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,575
CDSs (total) :: 1,494
Genes (coding) :: 1,480
CDSs (with protein) :: 1,480
Genes (RNA) :: 81
rRNAs :: 5, 5, 5 (5S, 16S, 23S)
complete rRNAs :: 5, 5, 5 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 3
Pseudo Genes (total) :: 14
CDSs (without protein) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 11 of 14
Pseudo Genes (internal stop) :: 1 of 14
Pseudo Genes (multiple problems) :: 3 of 14
CRISPR Arrays :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Apilactobacillus apisilvae"
/mol_type="genomic DNA"
/strain="SG5_A10"
/isolation_source="Bee"
/host="Austroplebeia australis"
/type_material="type strain of Apilactobacillus apisilvae"
/db_xref="taxon:2923364"
/country="Australia: Brisbane"
/lat_lon="27.4810 S 153.0121 E"
/collection_date="2020-04-30"
protein /gene="murD"
/locus_tag="MOO46_02900"
/EC_number="6.3.2.9"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010620116.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology. GO_function:
GO:0008764 - UDP-N-acetylmuramoylalanine-D-glutamate
ligase activity [Evidence IEA]; GO_process: GO:0009252 -
peptidoglycan biosynthetic process [Evidence IEA]"
/transl_table=11
BEGIN
1 MKNINKYTNK NILVLGAGKS GTNAAKLLIK LGAKVVLSDS KTEEQITDKA LLESIGVKVL
61 AGKQSPDILA SNDFDLVVKN PGIPYDTPIV KKAQELKLPI IVEVELASEI TDAELIGVTG
121 SNGKTTTTTM INKMLNMERT SGESRVAGNI GVPASNVAEK SNSDDDIVME LSSFMLLGIT
181 ELHPHIAVLT NIFSNHLDYH KTRQNYVNAK MRITMNQNKN DFFIVNFDNE EWRSLSKKSN
241 AQVIPFSRKG NSTKGAYEKD GKLYFKDEYI MDAQNIRIPG EQNIENALAA IAVAKIKQRS
301 NVAIKHVLET FGGVRHRVQY VLESEDRKFY NDSKATDIEA TQMALRGFNK PVVLLAGGLD
361 RGYKFDQLVP DLKKHVSGIV LFGETRYLLE DAAKQANIKN IKLVNNLDEA VPLAYKLSNQ
421 GDIILLSPAN ASWDQFSTFE VRGDQFIKDV ENLTGKKEEK
//