LOCUS UQS85358.1 881 aa PRT BCT 19-SEP-2022
DEFINITION Apilactobacillus apisilvae hypothetical protein protein.
ACCESSION CP093362-349
PROTEIN_ID UQS85358.1
SOURCE Apilactobacillus apisilvae
ORGANISM Apilactobacillus apisilvae
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
Apilactobacillus.
REFERENCE 1 (bases 1 to 1469670)
AUTHORS Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
and Jiranek,V.
TITLE Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
sp. nov., Bombilactobacillus folatiphilus sp. nov. and
Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
bacterial isolates from stingless bees Tetragonula carbonaria and
Austroplebeia australis
JOURNAL Int J Syst Evol Microbiol 72 (9) (2022)
PUBMED 36094463
REFERENCE 2 (bases 1 to 1469670)
AUTHORS Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
Jiranek,V.
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: NOV-2020
Assembly Method :: Smrtlink v. 9.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 11482x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 03/14/2022 11:52:50
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,575
CDSs (total) :: 1,494
Genes (coding) :: 1,480
CDSs (with protein) :: 1,480
Genes (RNA) :: 81
rRNAs :: 5, 5, 5 (5S, 16S, 23S)
complete rRNAs :: 5, 5, 5 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 3
Pseudo Genes (total) :: 14
CDSs (without protein) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 11 of 14
Pseudo Genes (internal stop) :: 1 of 14
Pseudo Genes (multiple problems) :: 3 of 14
CRISPR Arrays :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Apilactobacillus apisilvae"
/mol_type="genomic DNA"
/strain="SG5_A10"
/isolation_source="Bee"
/host="Austroplebeia australis"
/type_material="type strain of Apilactobacillus apisilvae"
/db_xref="taxon:2923364"
/country="Australia: Brisbane"
/lat_lon="27.4810 S 153.0121 E"
/collection_date="2020-04-30"
protein /locus_tag="MOO46_01850"
/inference="COORDINATES: protein motif:HMM:TIGR00573.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MSSTIFSVVD IETTGTSQSN NNRIIQFSCT FVKNKTIIGS FNSFINPEME IPDDITKLTG
61 ITNELVKNAP TFEEIANKIY SLLSNTIFVA HNVNFDFPFI NSELSRIDID KLEIMAIDTV
121 TLSQLLLPTE KSYRLIDLSK NLNILHKHPH SSSSDALATA KLLIILLNQI EKMPKKTIKK
181 IIKINPALPM DTMDVFKNAY NNIIDKDNDK LIDINTLKIR KIQYKNSQKL KDNIYPSSKD
241 KKKHLFGGIN NFSDEQNKLM NSIYNNYKFS KQSKNLLMET NDELDDDFSY LFPLSYLIGN
301 NKKIVVSVHK HKLHGDLSKV INKINKISQN NLKKIVLHSS DDYIDLNKFR DALSVVSGSK
361 RTEFLKCKIL IWLTFTKTGD LHELNVDMNN EQNSFLKIIG NINNKGYYIN KLKSDLKNSN
421 IIVISHEFLF NNIKSIAKYH PYLIVKDANQ FNEQLLRHYR VNFQINQNKI LIHHVQYLLY
481 QTHNKNLYDV FNNSTKNHYI VKQIDDLLKS YEKLTARIQE SFSKKLIKKD KLINKDNIYI
541 NQIDNSDLYN FFNNHKIDIQ NQHSILNKIN VLRKKLISVS EIQIEDKAIL NDFNDHFIEL
601 EKFFNNNITL IAKLIQNNNN VIFENDLNID KNVDNSLFRG GLINNKNLLN QIIYKYISNI
661 LFMDDSLYTR GNLSPILNKL ELETKNTLIL NNRGSNDLSK DYKVLLNGKK DKIDLDKLNL
721 DQENVFIMAN TQSSINDIYK NLIENDCKYK SVILSQKING NKEKIIKKFT NSKKSIIIGN
781 YDLFLSIRDI SERINCLIFE SFKFNNLYLD SENKNLPIFK LMIKNSIKHL IELSNVKGTI
841 LLNNINYIND IGVKDIRELL PNNLKLKVLS IDKIIKQFNN N
//